SequenceI seq = new Sequence("TestSeq/8-14", "PLRFQMD");
MapList map = new MapList(new int[] { 101, 118 }, new int[] { 8, 13 },
3, 1);
- Mapping mapping = new Mapping(seq.getDatasetSequence(), map);
+ Mapping mapping = new Mapping(seq, map);
List<SequenceFeature> features = new ArrayList<>();
// vary ttg (Leu) to ttc (Phe)
SequenceFeature sf = new SequenceFeature("variant", "G,C", 106, 106,
+ "<tr><td>Peptide Location</td><td>TestSeq</td><td>9</td></tr>"
+ "<tr><td>Type</td><td>variant</td><td></td></tr>"
+ "<tr><td>Description</td><td>G,C</td><td></td></tr>"
- + "<tr><td>Consequence</td><td><i>Imputed by Jalview</i></td><td>p.Leu9Phe</td></tr>"
+ + "<tr><td>Consequence</td><td><i>Translated by Jalview</i></td><td>p.Leu9Phe</td></tr>"
+ "<tr><td>alleles</td><td></td><td>G,C</td></tr>"
+ "</table>";