JAL-3863 promote non-canonical version of dbref to a canonical one

[jalview.git] / test / jalview / datamodel / SequenceTest.java

diff --git a/test/jalview/datamodel/SequenceTest.java b/test/jalview/datamodel/SequenceTest.java
index 129d7b3..e549978 100644 (file)
--- a/test/jalview/datamodel/SequenceTest.java
+++ b/test/jalview/datamodel/SequenceTest.java
@@ -2175,4 +2175,25 @@ public class SequenceTest
     assertEquals(0, seq.firstResidueOutsideIterator(cs.iterator()));
 
   }
+  @Test(groups= {"Functional"})
+  public void testTransferAnnotation() {
+    Sequence origSeq = new Sequence("MYSEQ","THISISASEQ");
+    Sequence toSeq = new Sequence("MYSEQ","THISISASEQ");
+    origSeq.addDBRef(new DBRefEntry("UNIPROT", "0", "Q12345", null, true));
+    toSeq.transferAnnotation(origSeq, null);
+    assertTrue(toSeq.getDBRefs().size()==1);
+    
+    assertTrue(toSeq.getDBRefs().get(0).isCanonical());
+    
+    // check for promotion of non-canonical 
+    // to canonical (e.g. fetch-db-refs on a jalview project pre 2.11.2)
+    toSeq.setDBRefs(null);
+    toSeq.addDBRef(new DBRefEntry("UNIPROT", "0", "Q12345", null, false));
+    toSeq.transferAnnotation(origSeq, null);
+    assertTrue(toSeq.getDBRefs().size()==1);
+    
+    assertTrue("Promotion of non-canonical DBRefEntry failed",toSeq.getDBRefs().get(0).isCanonical());
+    
+    
+  }
 }