JAL-2446 various get and find methods added with test coverage

[jalview.git] / test / jalview / datamodel / features / FeatureStoreTest.java

diff --git a/test/jalview/datamodel/features/FeatureStoreTest.java b/test/jalview/datamodel/features/FeatureStoreTest.java
index e355aaf..7147c51 100644 (file)
--- a/test/jalview/datamodel/features/FeatureStoreTest.java
+++ b/test/jalview/datamodel/features/FeatureStoreTest.java
@@ -229,4 +229,47 @@ public class FeatureStoreTest
             null);
     assertFalse(fs.addNonNestedFeature(sf10));
   }
+
+  @Test(groups = "Functional")
+  public void testGetFeatures()
+  {
+    FeatureStore store = new FeatureStore();
+    SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
+            Float.NaN, null);
+    store.addFeature(sf1);
+    // same range
+    SequenceFeature sf2 = new SequenceFeature("Metal", "desc", 10, 20,
+            Float.NaN, null);
+    store.addFeature(sf2);
+    // discontiguous range
+    SequenceFeature sf3 = new SequenceFeature("Metal", "desc", 30, 40,
+            Float.NaN, null);
+    store.addFeature(sf3);
+    // overlapping range
+    SequenceFeature sf4 = new SequenceFeature("Metal", "desc", 15, 35,
+            Float.NaN, null);
+    store.addFeature(sf4);
+    // enclosing range
+    SequenceFeature sf5 = new SequenceFeature("Metal", "desc", 5, 50,
+            Float.NaN, null);
+    store.addFeature(sf5);
+    // non-positional feature
+    SequenceFeature sf6 = new SequenceFeature("Metal", "desc", 0, 0,
+            Float.NaN, null);
+    store.addFeature(sf6);
+    // contact feature
+    SequenceFeature sf7 = new SequenceFeature("Disulphide bond", "desc",
+            18, 45, Float.NaN, null);
+    store.addFeature(sf7);
+
+    List<SequenceFeature> features = store.getFeatures();
+    assertEquals(features.size(), 7);
+    assertTrue(features.contains(sf1));
+    assertTrue(features.contains(sf2));
+    assertTrue(features.contains(sf3));
+    assertTrue(features.contains(sf4));
+    assertTrue(features.contains(sf5));
+    assertTrue(features.contains(sf6));
+    assertTrue(features.contains(sf7));
+  }
 }