@Test(groups = "Functional")
public void testGetPositionalFeatures()
{
- SequenceFeatures store = new SequenceFeatures();
+ SequenceFeaturesI store = new SequenceFeatures();
SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
Float.NaN, null);
store.add(sf1);
@Test(groups = "Functional")
public void testGetContactFeatures()
{
- SequenceFeatures store = new SequenceFeatures();
+ SequenceFeaturesI store = new SequenceFeatures();
// non-contact
SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
Float.NaN, null);
@Test(groups = "Functional")
public void testGetNonPositionalFeatures()
{
- SequenceFeatures store = new SequenceFeatures();
+ SequenceFeaturesI store = new SequenceFeatures();
// positional
SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
Float.NaN, null);
* @param to
* @return
*/
- SequenceFeature addFeature(SequenceFeatures sf, String type, int from,
+ SequenceFeature addFeature(SequenceFeaturesI sf, String type, int from,
int to)
{
SequenceFeature sf1 = new SequenceFeature(type, "", from, to,
@Test(groups = "Functional")
public void testFindFeatures()
{
- SequenceFeatures sf = new SequenceFeatures();
+ SequenceFeaturesI sf = new SequenceFeatures();
SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
SequenceFeature sf2 = addFeature(sf, "Pfam", 1, 15);
SequenceFeature sf3 = addFeature(sf, "Pfam", 20, 30);
@Test(groups = "Functional")
public void testDelete()
{
- SequenceFeatures sf = new SequenceFeatures();
+ SequenceFeaturesI sf = new SequenceFeatures();
SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
assertTrue(sf.getPositionalFeatures().contains(sf1));
@Test(groups = "Functional")
public void testHasFeatures()
{
- SequenceFeatures sf = new SequenceFeatures();
+ SequenceFeaturesI sf = new SequenceFeatures();
assertFalse(sf.hasFeatures());
SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
@Test(groups = "Functional")
public void testGetFeatureGroups()
{
- SequenceFeatures sf = new SequenceFeatures();
+ SequenceFeaturesI sf = new SequenceFeatures();
assertTrue(sf.getFeatureGroups(true).isEmpty());
assertTrue(sf.getFeatureGroups(false).isEmpty());
@Test(groups = "Functional")
public void testGetFeatureTypesForGroups()
{
- SequenceFeatures sf = new SequenceFeatures();
+ SequenceFeaturesI sf = new SequenceFeatures();
assertTrue(sf.getFeatureTypesForGroups(true, (String) null).isEmpty());
/*