JAL-2480 SequenceFeaturesI encapsulates features api

[jalview.git] / test / jalview / datamodel / features / SequenceFeaturesTest.java

diff --git a/test/jalview/datamodel/features/SequenceFeaturesTest.java b/test/jalview/datamodel/features/SequenceFeaturesTest.java
index 84a07b4..f9b9b6e 100644 (file)
--- a/test/jalview/datamodel/features/SequenceFeaturesTest.java
+++ b/test/jalview/datamodel/features/SequenceFeaturesTest.java
@@ -16,7 +16,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testGetPositionalFeatures()
   {
-    SequenceFeatures store = new SequenceFeatures();
+    SequenceFeaturesI store = new SequenceFeatures();
     SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
             Float.NaN, null);
     store.add(sf1);
@@ -96,7 +96,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testGetContactFeatures()
   {
-    SequenceFeatures store = new SequenceFeatures();
+    SequenceFeaturesI store = new SequenceFeatures();
     // non-contact
     SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
             Float.NaN, null);
@@ -148,7 +148,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testGetNonPositionalFeatures()
   {
-    SequenceFeatures store = new SequenceFeatures();
+    SequenceFeaturesI store = new SequenceFeatures();
     // positional
     SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
             Float.NaN, null);
@@ -211,7 +211,7 @@ public class SequenceFeaturesTest
    * @param to
    * @return
    */
-  SequenceFeature addFeature(SequenceFeatures sf, String type, int from,
+  SequenceFeature addFeature(SequenceFeaturesI sf, String type, int from,
           int to)
   {
     SequenceFeature sf1 = new SequenceFeature(type, "", from, to,
@@ -224,7 +224,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testFindFeatures()
   {
-    SequenceFeatures sf = new SequenceFeatures();
+    SequenceFeaturesI sf = new SequenceFeatures();
     SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
     SequenceFeature sf2 = addFeature(sf, "Pfam", 1, 15);
     SequenceFeature sf3 = addFeature(sf, "Pfam", 20, 30);
@@ -288,7 +288,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testDelete()
   {
-    SequenceFeatures sf = new SequenceFeatures();
+    SequenceFeaturesI sf = new SequenceFeatures();
     SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
     assertTrue(sf.getPositionalFeatures().contains(sf1));
 
@@ -302,7 +302,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testHasFeatures()
   {
-    SequenceFeatures sf = new SequenceFeatures();
+    SequenceFeaturesI sf = new SequenceFeatures();
     assertFalse(sf.hasFeatures());
 
     SequenceFeature sf1 = addFeature(sf, "Pfam", 10, 50);
@@ -319,7 +319,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testGetFeatureGroups()
   {
-    SequenceFeatures sf = new SequenceFeatures();
+    SequenceFeaturesI sf = new SequenceFeatures();
     assertTrue(sf.getFeatureGroups(true).isEmpty());
     assertTrue(sf.getFeatureGroups(false).isEmpty());
 
@@ -412,7 +412,7 @@ public class SequenceFeaturesTest
   @Test(groups = "Functional")
   public void testGetFeatureTypesForGroups()
   {
-    SequenceFeatures sf = new SequenceFeatures();
+    SequenceFeaturesI sf = new SequenceFeatures();
     assertTrue(sf.getFeatureTypesForGroups(true, (String) null).isEmpty());
   
     /*