SequenceRenderer sr = new SequenceRenderer(af.getViewport());
SequenceI[][] seqs = new SequenceI[][] { { seq1 }, { seq2 } };
String[] files = new String[] { "seq1.pdb", "seq2.pdb" };
- StructureSelectionManager ssm = new StructureSelectionManager();
+ StructureSelectionManager ssm = StructureSelectionManager.getStructureSelectionManager(null);
/*
* map residues 1-10 to residues 21-30 (atoms 105-150) in structures
"B", map, null);
ssm.addStructureMapping(sm2);
+ // TODO - comments in testee suggest this tests an obsolete method!
String[] commands = testee.colourBySequence(ssm, files, seqs, sr,
af.alignPanel);
assertEquals(commands.length, 2);