JAL-3148 show/hide features on structure independent of alignment

[jalview.git] / test / jalview / ext / jmol / JmolCommandsTest.java

diff --git a/test/jalview/ext/jmol/JmolCommandsTest.java b/test/jalview/ext/jmol/JmolCommandsTest.java
index 3309adf..51bb885 100644 (file)
--- a/test/jalview/ext/jmol/JmolCommandsTest.java
+++ b/test/jalview/ext/jmol/JmolCommandsTest.java
@@ -66,7 +66,7 @@ public class JmolCommandsTest
     // need some mappings!
 
     StructureMappingcommandSet[] commands = JmolCommands
-            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
+            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel, false);
   }
 
   @Test(groups = { "Functional" })
@@ -108,14 +108,14 @@ public class JmolCommandsTest
     ssm.addStructureMapping(sm2);
   
     StructureMappingcommandSet[] commands = JmolCommands
-            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
+            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel, false);
     assertEquals(commands.length, 2);
     assertEquals(commands[0].commands.length, 1);
 
     String chainACommand = commands[0].commands[0];
     // M colour is #82827d == (130, 130, 125) (see strand.html help page)
     assertTrue(chainACommand
-            .contains(";select 21:A/1.1;color[130,130,125]"));
+            .contains("select 21:A/1.1;color[130,130,125]")); // first one
     // H colour is #60609f == (96, 96, 159)
     assertTrue(chainACommand.contains(";select 22:A/1.1;color[96,96,159]"));
     // hidden columns are Gray (128, 128, 128)
@@ -128,7 +128,7 @@ public class JmolCommandsTest
     String chainBCommand = commands[1].commands[0];
     // M colour is #82827d == (130, 130, 125)
     assertTrue(chainBCommand
-            .contains(";select 21:B/2.1;color[130,130,125]"));
+            .contains("select 21:B/2.1;color[130,130,125]"));
     // V colour is #ffff00 == (255, 255, 0)
     assertTrue(chainBCommand
 .contains(";select 22:B/2.1;color[255,255,0]"));