JAL-4313 Clamp start and end ranges to array size

[jalview.git] / test / jalview / ext / jmol / JmolParserTest.java

diff --git a/test/jalview/ext/jmol/JmolParserTest.java b/test/jalview/ext/jmol/JmolParserTest.java
index bcad464..4047660 100644 (file)
--- a/test/jalview/ext/jmol/JmolParserTest.java
+++ b/test/jalview/ext/jmol/JmolParserTest.java
@@ -42,7 +42,7 @@ import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
-import MCview.PDBfile;
+import mc_view.PDBfile;
 
 /**
  * @author jimp
@@ -98,11 +98,11 @@ public class JmolParserTest
   public void setUp()
   {
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
-    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+    Cache.setPropertyNoSave("STRUCT_FROM_PDB",
             Boolean.TRUE.toString());
-    Cache.applicationProperties.setProperty("ADD_TEMPFACT_ANN",
+    Cache.setPropertyNoSave("ADD_TEMPFACT_ANN",
             Boolean.FALSE.toString());
-    Cache.applicationProperties.setProperty("ADD_SS_ANN",
+    Cache.setPropertyNoSave("ADD_SS_ANN",
             Boolean.TRUE.toString());
     StructureImportSettings.setDefaultStructureFileFormat("PDB");
     StructureImportSettings
@@ -277,6 +277,11 @@ public class JmolParserTest
     assertEquals(structureData.getId(), "localstruct");
     assertNotNull(structureData.getSeqs());
     /*
+     * local structures have a fake ID
+     */
+    assertTrue(structureData.getSeqs().get(0).getAllPDBEntries().get(0)
+            .fakedPDBId());
+    /*
      * the ID is also the group for features derived from structure data 
      */
     String featureGroup = structureData.getSeqs().get(0)