JAL-1270 more fix for failing Functional test

[jalview.git] / test / jalview / ext / jmol / JmolParserTest.java

diff --git a/test/jalview/ext/jmol/JmolParserTest.java b/test/jalview/ext/jmol/JmolParserTest.java
index 09b309d..7ac1579 100644 (file)
--- a/test/jalview/ext/jmol/JmolParserTest.java
+++ b/test/jalview/ext/jmol/JmolParserTest.java
@@ -50,8 +50,8 @@ public class JmolParserTest
    * 1QCF is the full PDB file including headers, HETATM etc
    */
   String[] testFile = new String[] { "./examples/1GAQ.txt",
-      "./test/jalview/ext/jmol/1QCF.pdb" }; // ,
-  // String[] testFile = new String[] { "./examples/testdata/1qcf.cif" }; // ,
+      "./test/jalview/ext/jmol/1xyz.pdb",
+      "./test/jalview/ext/jmol/1qcf.pdb" };
 
   //@formatter:off
   // a modified and very cut-down extract of 4UJ4
@@ -105,15 +105,11 @@ public class JmolParserTest
   @Test(groups = { "Functional" })
   public void testFileParser() throws Exception
   {
-    boolean annotFromStructure = false;
-    boolean localSecondaryStruct = false;
-    boolean serviceSecondaryStruct = false;
     for (String pdbStr : testFile)
     {
       PDBfile mctest = new PDBfile(false, false, false, pdbStr,
               AppletFormatAdapter.FILE);
-      JmolParser jtest = new JmolParser(annotFromStructure,
-              localSecondaryStruct, serviceSecondaryStruct, pdbStr,
+      JmolParser jtest = new JmolParser(false, false, false, pdbStr,
               jalview.io.AppletFormatAdapter.FILE);
       Vector<SequenceI> seqs = jtest.getSeqs(), mcseqs = mctest.getSeqs();