Merge branch 'develop' into features/JAL-1933_occupancy
[jalview.git] / test / jalview / ext / rbvi / chimera / ChimeraCommandsTest.java
index d351171..2c973ca 100644 (file)
@@ -202,8 +202,7 @@ public class ChimeraCommandsTest
     ssm.addStructureMapping(sm2);
 
     StructureMappingcommandSet[] commands = ChimeraCommands
-            .getColourBySequenceCommand(ssm, files, seqs, sr, null,
-                    af.getViewport());
+            .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
     assertEquals(1, commands.length);
     assertEquals(1, commands[0].commands.length);
     String theCommand = commands[0].commands[0];
@@ -211,7 +210,7 @@ public class ChimeraCommandsTest
     assertTrue(theCommand.contains("color #82827d #0:21.A|#1:21.B"));
     // H colour is #60609f
     assertTrue(theCommand.contains("color #60609f #0:22.A"));
-    // V colour is ##ffff00
+    // V colour is #ffff00
     assertTrue(theCommand.contains("color #ffff00 #1:22.B"));
     // hidden columns are Gray (128, 128, 128)
     assertTrue(theCommand.contains("color #808080 #0:23-25.A|#1:23-25.B"));