ssm.addStructureMapping(sm2);
StructureMappingcommandSet[] commands = ChimeraCommands
- .getColourBySequenceCommand(ssm, files, seqs, sr, null,
- af.getViewport());
+ .getColourBySequenceCommand(ssm, files, seqs, sr, af.alignPanel);
assertEquals(1, commands.length);
assertEquals(1, commands[0].commands.length);
String theCommand = commands[0].commands[0];
assertTrue(theCommand.contains("color #82827d #0:21.A|#1:21.B"));
// H colour is #60609f
assertTrue(theCommand.contains("color #60609f #0:22.A"));
- // V colour is ##ffff00
+ // V colour is #ffff00
assertTrue(theCommand.contains("color #ffff00 #1:22.B"));
// hidden columns are Gray (128, 128, 128)
assertTrue(theCommand.contains("color #808080 #0:23-25.A|#1:23-25.B"));