// Colours should appear in the Chimera command in the order in which
// they were added; within colour, by model, by chain, ranges in start order
- // all prefixed with #808080 to colour hidden regions (if shown) gray
List<StructureCommandI> commands = testee.colourBySequence(map);
assertEquals(commands.size(), 1);
assertEquals(commands.get(0).getCommand(),
- "color #808080; color #0000ff #0:2-5.A,9-23.A,7.B|#1:1.A,4-7.B;color #ffff00 #1:3-5.A,8.A;color #ff0000 #0:3-9.A");
+ "color #0000ff #0:2-5.A,9-23.A,7.B|#1:1.A,4-7.B;color #ffff00 #1:3-5.A,8.A;color #ff0000 #0:3-9.A");
}
@Test(groups = { "Functional" })
assertEquals(testee.setAttribute("jv_kd", "27.3", model).getCommand(),
"setattr res jv_kd '27.3' #1:89-92.A|#2:8-9.B,12-20.B");
}
+
+ @Test(groups = "Functional")
+ public void testHideAll()
+ {
+ StructureCommandI cmd = testee.hideAll();
+ assertEquals(cmd.getCommand(), "~display all; ~ribbon");
+ }
+
+ @Test(groups = "Functional")
+ public void testHideChain()
+ {
+ StructureCommandI cmd = testee.hideChain("1.1", "B");
+ assertEquals(cmd.getCommand(), "~ribbon #1.1:.B");
+ }
+
+ @Test(groups = "Functional")
+ public void testShowStructures()
+ {
+ /*
+ * with nothing excluded
+ */
+ StructureCommandI cmd = testee.showStructures(null);
+ assertEquals(cmd.getCommand(), "ribbon");
+
+ /*
+ * restricted to specified positions
+ */
+ AtomSpecModel restrictTo = new AtomSpecModel();
+ restrictTo.addRange("1.1", 12, 20, "A");
+ restrictTo.addRange("1.1", 30, 35, "A");
+ restrictTo.addRange("2.1", 11, 30, "B");
+ cmd = testee.showStructures(restrictTo);
+ assertEquals(cmd.getCommand(),
+ "ribbon #1.1:12-20.A,30-35.A|#2.1:11-30.B");
+ }
}