+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ext.rbvi.chimera;
import static org.testng.AssertJUnit.assertEquals;
@BeforeClass(alwaysRun = true)
public static void setUpBeforeClass() throws Exception
{
- jalview.bin.Jalview.main(new String[]
- {
+ jalview.bin.Jalview.main(new String[] {
"-noquestionnaire -nonews -props",
"test/jalview/ext/rbvi/chimera/testProps.jvprops" });
}
/**
* @throws java.lang.Exception
*/
- @AfterClass
+ @AfterClass(alwaysRun = true)
public static void tearDownAfterClass() throws Exception
{
jalview.gui.Desktop.instance.closeAll_actionPerformed(null);
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testSingleSeqViewChimera()
{
Cache.setProperty(Preferences.STRUCTURE_DISPLAY,
{
dsq = dsq.getDatasetSequence();
}
- if (dsq.getAllPDBEntries() != null && dsq.getAllPDBEntries().size() > 0)
+ if (dsq.getAllPDBEntries() != null
+ && dsq.getAllPDBEntries().size() > 0)
{
for (int q = 0; q < dsq.getAllPDBEntries().size(); q++)
{
structureViewer.setViewerType(ViewerType.CHIMERA);
JalviewStructureDisplayI chimeraViewer = structureViewer
.viewStructures(dsq.getAllPDBEntries().elementAt(q),
- new SequenceI[]
- { sq }, af.getCurrentView().getAlignPanel());
+ new SequenceI[] { sq }, af.getCurrentView()
+ .getAlignPanel());
/*
* Wait for viewer load thread to complete
*/