import jalview.datamodel.SequenceI;
import jalview.gui.AlignFrame;
import jalview.gui.Desktop;
+import jalview.gui.JvOptionPane;
import jalview.gui.Preferences;
import jalview.gui.StructureViewer;
import jalview.gui.StructureViewer.ViewerType;
import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
import jalview.structure.StructureMapping;
import jalview.structure.StructureSelectionManager;
import jalview.ws.sifts.SiftsClient;
import java.io.IOException;
import java.util.List;
import java.util.Vector;
+import jalview.io.DataSourceType;
import org.testng.annotations.AfterClass;
import org.testng.annotations.AfterMethod;
public class JalviewChimeraView
{
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
private JalviewStructureDisplayI chimeraViewer;
/**
{
String inFile = "examples/1gaq.txt";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(inFile,
- FormatAdapter.FILE);
+ DataSourceType.FILE);
assertNotNull(af, "Failed to create AlignFrame");
SequenceI sq = af.getViewport().getAlignment().getSequenceAt(0);
assertEquals(sq.getName(), "1GAQ|A");
{
String inFile = "examples/uniref50.fa";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(inFile,
- FormatAdapter.FILE);
+ DataSourceType.FILE);
assertNotNull(af, "Failed to create AlignFrame");
SequenceI sq = af.getViewport().getAlignment().findName("FER2_ARATH");
assertNotNull(sq, "Didn't find FER2_ARATH");
{
String inFile = "examples/uniref50.fa";
AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(inFile,
- FormatAdapter.FILE);
+ DataSourceType.FILE);
assertNotNull(af, "Failed to create AlignFrame");
SequenceI fer2Arath = af.getViewport().getAlignment()
.findName("FER2_ARATH");