*/
assertFalse(alignFrame.hideFeatureColumns("exon", true));
assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
- assertTrue(alignFrame.getViewport().getColumnSelection().getHiddenColumns()
+ assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
+ .getHiddenColumnsCopy()
.isEmpty());
assertFalse(alignFrame.hideFeatureColumns("exon", false));
assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
- assertTrue(alignFrame.getViewport().getColumnSelection().getHiddenColumns()
+ assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
+ .getHiddenColumnsCopy()
.isEmpty());
/*
*/
assertFalse(alignFrame.hideFeatureColumns("Metal", true));
assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
- List<int[]> hidden = alignFrame.getViewport().getColumnSelection()
- .getHiddenColumns();
+ List<int[]> hidden = alignFrame.getViewport().getAlignment()
+ .getHiddenColumns()
+ .getHiddenColumnsCopy();
assertTrue(hidden.isEmpty());
/*
* [1-3], [6-8] base zero
*/
assertTrue(alignFrame.hideFeatureColumns("Turn", true));
- hidden = alignFrame.getViewport().getColumnSelection().getHiddenColumns();
+ hidden = alignFrame.getViewport().getAlignment().getHiddenColumns()
+ .getHiddenColumnsCopy();
assertEquals(hidden.size(), 2);
assertEquals(hidden.get(0)[0], 1);
assertEquals(hidden.get(0)[1], 3);
assertEquals(af.alignPanel.getViewName(), "View 1");
AlignViewport av2 = af.getViewport();
assertNotSame(av, av2);
+ assertSame(av2, af.alignPanel.av);
rs = av2.getResidueShading();
assertNotSame(av.getResidueShading(), rs);
assertEquals(rs.getThreshold(), 10);
- assertTrue(rs.conservationApplied());
+ assertTrue(rs.conservationApplied(), rs.toString());
assertEquals(rs.getConservationInc(), 20);
assertEquals(av2.getAlignment().getGroups().size(), 1);
sg = av2.getAlignment().getGroups().get(0);