import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertTrue;
-import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
-import jalview.bin.Cache;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.Annotation;
-import jalview.datamodel.SequenceGroup;
-import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
-import jalview.util.MessageManager;
import java.awt.BorderLayout;
import java.awt.Checkbox;
import org.junit.Before;
import org.junit.Test;
+import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
+import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
+import jalview.io.AppletFormatAdapter;
+import jalview.util.MessageManager;
+
/**
* Unit tests for AnnotationChooser
*
// pin down annotation sort order for test
Cache.applicationProperties.setProperty(Preferences.SORT_ANNOTATIONS,
SequenceAnnotationOrder.NONE.name());
+ final String True = Boolean.TRUE.toString();
Cache.applicationProperties.setProperty(
- Preferences.SHOW_AUTOCALC_ABOVE, Boolean.TRUE.toString());
+ Preferences.SHOW_AUTOCALC_ABOVE, True);
+ Cache.applicationProperties.setProperty("SHOW_QUALITY", True);
+ Cache.applicationProperties.setProperty("SHOW_CONSERVATION", True);
+ Cache.applicationProperties.setProperty("SHOW_IDENTITY", True);
AlignmentI al = new jalview.io.FormatAdapter().readFile(TEST_DATA,
AppletFormatAdapter.PASTE, "FASTA");