public void setUp()
{
Cache.loadProperties("test/jalview/io/testProps.jvprops");
- Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS",
- Boolean.TRUE.toString());
- Cache.applicationProperties.setProperty(Preferences.SHOW_AUTOCALC_ABOVE,
+ Cache.setPropertyNoSave("SHOW_ANNOTATIONS",
Boolean.TRUE.toString());
+ Cache.setPropertyNoSave(
+ Preferences.SHOW_AUTOCALC_ABOVE, Boolean.TRUE.toString());
af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
DataSourceType.FILE);
testee = new AnnotationRowFilter(af.viewport, af.alignPanel)
null);
ann4.setSequenceRef(seq2);
al.addAnnotation(ann4);
- AlignmentAnnotation ann5 = new AlignmentAnnotation("Jnet", "Jnet",
- null);
+ AlignmentAnnotation ann5 = new AlignmentAnnotation("Jnet", "Jnet", null);
ann5.setSequenceRef(seq2);
al.addAnnotation(ann5);
/*
* a second Jnet annotation for FER_BRANA
*/
- AlignmentAnnotation ann6 = new AlignmentAnnotation("Jnet", "Jnet",
- null);
+ AlignmentAnnotation ann6 = new AlignmentAnnotation("Jnet", "Jnet", null);
ann6.setSequenceRef(seq2);
al.addAnnotation(ann6);
* drop-down items with 'Per-sequence only' not checked
*/
Vector<String> items = testee.getAnnotationItems(false);
- assertEquals(items.toString(),
+ assertEquals(
+ items.toString(),
"[Conservation, Quality, Consensus, Occupancy, ann1Label, Significance, Significance_1, Jronn_FER_CAPAA, Jronn_FER_BRANA, Jnet_FER_BRANA, Jnet_FER_BRANA_2]");
assertEquals(testee.getAnnotationMenuLabel(ann1), "ann1Label");
assertEquals(testee.getAnnotationMenuLabel(ann2), "Significance");