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Merge branch 'develop' into bug/JAL-4235_gradle_task_jalviewjsTranspile_does_not_fail...
[jalview.git] / test / jalview / gui / FeatureSettingsTest.java
diff --git a/test/jalview/gui/FeatureSettingsTest.java b/test/jalview/gui/FeatureSettingsTest.java
index 55f2111..7cc4cc1 100644 (file)
--- a/test/jalview/gui/FeatureSettingsTest.java
+++ b/test/jalview/gui/FeatureSettingsTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.gui;
 
 import static org.testng.Assert.assertEquals;
@@ -9,16 +29,23 @@ import java.io.File;
 import java.io.IOException;
 import java.util.HashMap;
 
+import org.testng.annotations.AfterMethod;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 import jalview.api.FeatureColourI;
+import jalview.bin.Cache;
+import jalview.bin.Jalview;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.features.FeatureMatcher;
 import jalview.datamodel.features.FeatureMatcherSet;
 import jalview.datamodel.features.FeatureMatcherSetI;
 import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
+import jalview.io.FileFormatI;
 import jalview.io.FileLoader;
+import jalview.io.IdentifyFile;
 import jalview.schemes.FeatureColour;
 import jalview.schemes.FeatureColourTest;
 import jalview.util.matcher.Condition;
@@ -26,6 +53,23 @@ import jalview.viewmodel.seqfeatures.FeatureRendererModel;
 
 public class FeatureSettingsTest
 {
+  @BeforeClass(alwaysRun = true)
+  public static void setUpBeforeClass() throws Exception
+  {
+    /*
+     * use read-only test properties file
+     */
+    Cache.loadProperties("test/jalview/io/testProps.jvprops");
+    Jalview.main(new String[] { "--nonews" });
+  }
+
+  @AfterMethod(alwaysRun = true)
+  public void tearDown()
+  {
+    if (Desktop.instance != null)
+      Desktop.instance.closeAll_actionPerformed(null);
+  }
+
   /**
    * Test a roundtrip of save and reload of feature colours and filters as XML
    * 
@@ -237,4 +281,13 @@ public class FeatureSettingsTest
             "<html>By Score (&gt; 4.0)<br>" + simpleTooltip
                     + "</br></html>");
   }
+  String fsfile="<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"yes\"?><ns2:JalviewUserColours schemeName=\"Sequence Features\" xmlns:ns2=\"www.jalview.org/colours\">",fsfile2="<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"yes\"?>\n<ns2:JalviewUserColours schemeName=\"Sequence Features\" xmlns:ns2=\"www.jalview.org/colours\">";
+  @Test(groups="Functional")
+  public void testIdentifyFeatureSettingsFile() throws Exception
+  {
+    FileFormatI type = new IdentifyFile().identify(fsfile, DataSourceType.PASTE);
+    assertTrue(FileFormat.FeatureSettings==type,"Feature settings file was identified as "+type);
+    type = new IdentifyFile().identify(fsfile2, DataSourceType.PASTE);
+    assertTrue(FileFormat.FeatureSettings==type,"Feature settings file with newline was identified as "+type);
+  }
 }