+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
import static org.testng.Assert.assertEquals;
import static org.testng.Assert.assertNull;
import static org.testng.Assert.assertTrue;
+import java.awt.Color;
+import java.io.File;
+import java.io.IOException;
+import java.util.HashMap;
+
+import org.testng.annotations.Test;
+
import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.schemes.FeatureColour;
import jalview.schemes.FeatureColourTest;
import jalview.util.matcher.Condition;
-
-import java.awt.Color;
-import java.io.File;
-import java.io.IOException;
-import java.util.HashMap;
-
-import org.testng.annotations.Test;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel;
public class FeatureSettingsTest
{
/*
* set colour schemes for features
*/
- FeatureRenderer fr = af.getFeatureRenderer();
+ FeatureRendererModel fr = af.getFeatureRenderer();
// type1: red
fr.setColour("type1", new FeatureColour(Color.red));
assertTrue(fc.isBelowThreshold());
assertEquals(fc.getThreshold(), 3f);
- assertEquals(fr.getFeatureFilter("type1").toStableString(), "Label Contains x");
+ assertEquals(fr.getFeatureFilter("type1").toStableString(),
+ "Label Contains x");
assertEquals(fr.getFeatureFilter("type2").toStableString(),
"(Score LE 2.4) AND (Score GT 1.1)");
assertEquals(fr.getFeatureFilter("type3").toStableString(),
- "(AF Contains X) OR (CSQ:PolyPhen NE 0.0)");
+ "(AF Contains X) OR (CSQ:PolyPhen NE 0)");
}
/**
@Test(groups = "Functional")
public void testGetColorTooltip() throws IOException
{
- assertNull(FeatureSettings.getColorTooltip(null));
+ assertNull(FeatureSettings.getColorTooltip(null, false));
/*
* simple colour
*/
FeatureColourI fc = new FeatureColour(Color.black);
String simpleTooltip = "Click to edit, right-click for menu";
- assertEquals(FeatureSettings.getColorTooltip(fc), simpleTooltip);
+ assertEquals(FeatureSettings.getColorTooltip(fc, true), simpleTooltip);
+ assertNull(FeatureSettings.getColorTooltip(fc, false));
/*
* graduated colour tooltip includes description of colour
*/
fc.setColourByLabel(true);
- assertEquals(FeatureSettings.getColorTooltip(fc),
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Label</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
"<html>By Label<br>" + simpleTooltip + "</br></html>");
/*
fc = new FeatureColour(null, Color.red, Color.blue, null, 2f, 10f);
fc.setBelowThreshold(true);
fc.setThreshold(4f);
- assertEquals(FeatureSettings.getColorTooltip(fc),
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Score (< 4.0)</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
"<html>By Score (< 4.0)<br>" + simpleTooltip
+ "</br></html>");
+
fc.setAboveThreshold(true);
- assertEquals(FeatureSettings.getColorTooltip(fc),
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Score (> 4.0)</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
"<html>By Score (> 4.0)<br>" + simpleTooltip
+ "</br></html>");
}