import jalview.io.DataSourceType;
import jalview.io.FileLoader;
import jalview.schemes.FeatureColour;
+import jalview.schemes.FeatureColourTest;
import jalview.util.matcher.Condition;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel;
import java.awt.Color;
import java.io.File;
/*
* set colour schemes for features
*/
- FeatureRenderer fr = af.getFeatureRenderer();
+ FeatureRendererModel fr = af.getFeatureRenderer();
// type1: red
fr.setColour("type1", new FeatureColour(Color.red));
fr.setColour("type2", byLabel);
// type3: by score above threshold
- FeatureColourI byScore = new FeatureColour(Color.BLACK, Color.BLUE, 1,
- 10);
+ FeatureColourI byScore = new FeatureColour(null, Color.BLACK,
+ Color.BLUE, null, 1, 10);
byScore.setAboveThreshold(true);
byScore.setThreshold(2f);
fr.setColour("type3", byScore);
fr.setColour("type4", byAF);
// type5: by attribute CSQ:PolyPhen below threshold
- FeatureColourI byPolyPhen = new FeatureColour(Color.BLACK, Color.BLUE,
- 1, 10);
+ FeatureColourI byPolyPhen = new FeatureColour(null, Color.BLACK,
+ Color.BLUE, null, 1, 10);
byPolyPhen.setBelowThreshold(true);
byPolyPhen.setThreshold(3f);
byPolyPhen.setAttributeName("CSQ", "PolyPhen");
});
seq.addSequenceFeature(sf);
}
+
+ /**
+ * @see FeatureColourTest#testGetDescription()
+ * @throws IOException
+ */
+ @Test(groups = "Functional")
+ public void testGetColorTooltip() throws IOException
+ {
+ assertNull(FeatureSettings.getColorTooltip(null, false));
+
+ /*
+ * simple colour
+ */
+ FeatureColourI fc = new FeatureColour(Color.black);
+ String simpleTooltip = "Click to edit, right-click for menu";
+ assertEquals(FeatureSettings.getColorTooltip(fc, true), simpleTooltip);
+ assertNull(FeatureSettings.getColorTooltip(fc, false));
+
+ /*
+ * graduated colour tooltip includes description of colour
+ */
+ fc.setColourByLabel(true);
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Label</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
+ "<html>By Label<br>" + simpleTooltip + "</br></html>");
+
+ /*
+ * graduated colour with threshold is html-encoded
+ */
+ fc = new FeatureColour(null, Color.red, Color.blue, null, 2f, 10f);
+ fc.setBelowThreshold(true);
+ fc.setThreshold(4f);
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Score (< 4.0)</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
+ "<html>By Score (< 4.0)<br>" + simpleTooltip
+ + "</br></html>");
+
+ fc.setAboveThreshold(true);
+ assertEquals(FeatureSettings.getColorTooltip(fc, false),
+ "<html>By Score (> 4.0)</html>");
+ assertEquals(FeatureSettings.getColorTooltip(fc, true),
+ "<html>By Score (> 4.0)<br>" + simpleTooltip
+ + "</br></html>");
+ }
}