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JAL-1598 replaced faulty regex, amended Varna call, to get pseudo-knots
[jalview.git] / test / jalview / gui / PopupMenuTest.java
diff --git a/test/jalview/gui/PopupMenuTest.java b/test/jalview/gui/PopupMenuTest.java
index f2248a8..ba1b275 100644 (file)
--- a/test/jalview/gui/PopupMenuTest.java
+++ b/test/jalview/gui/PopupMenuTest.java
@@ -1,8 +1,15 @@
 package jalview.gui;
 
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
+import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertFalse;
+import static org.testng.AssertJUnit.assertTrue;
+
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
+import jalview.datamodel.SequenceI;
+import jalview.io.AppletFormatAdapter;
+import jalview.io.FormatAdapter;
 
 import java.awt.Component;
 import java.io.IOException;
@@ -14,14 +21,8 @@ import javax.swing.JMenuItem;
 import javax.swing.JPopupMenu;
 import javax.swing.JSeparator;
 
-import org.junit.Before;
-import org.junit.Test;
-
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.SequenceI;
-import jalview.io.AppletFormatAdapter;
-import jalview.io.FormatAdapter;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
 
 public class PopupMenuTest
 {
@@ -40,7 +41,7 @@ public class PopupMenuTest
 
   PopupMenu testee = null;
 
-  @Before
+  @BeforeMethod
   public void setUp() throws IOException
   {
     alignment = new FormatAdapter().readFile(TEST_DATA,
@@ -129,7 +130,7 @@ public class PopupMenuTest
 
     testee.configureReferenceAnnotationsMenu(menu, seqs);
     assertTrue(menu.isEnabled());
-    String expected = "<html><table width=350 border=0><tr><td>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
+    String expected = "<html><table width=350 border=0><tr><td align=justify>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
     assertEquals(expected, menu.getToolTipText());
   }
 
@@ -150,7 +151,7 @@ public class PopupMenuTest
 
     testee.configureReferenceAnnotationsMenu(menu, seqs);
     assertTrue(menu.isEnabled());
-    String expected = "<html><table width=350 border=0><tr><td>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
+    String expected = "<html><table width=350 border=0><tr><td align=justify>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
     assertEquals(expected, menu.getToolTipText());
   }
 
@@ -238,28 +239,32 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+                    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // JMOL.secondary structure on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("secondary structure", "", 0);
+    annotation = new AlignmentAnnotation("secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("JMOL");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // Jpred.SSP on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("SSP", "", 0);
+    annotation = new AlignmentAnnotation("SSP", "", new Annotation[]
+            {});
     annotation.setCalcId("JPred");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -316,14 +321,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -373,14 +380,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB2");
     annotation.visible = false;
     seqs.get(1).addAlignmentAnnotation(annotation);