JAL-3490 Finder match across entirely gapped hidden regions

[jalview.git] / test / jalview / gui / PopupMenuTest.java

diff --git a/test/jalview/gui/PopupMenuTest.java b/test/jalview/gui/PopupMenuTest.java
index e04be68..bf961d8 100644 (file)
--- a/test/jalview/gui/PopupMenuTest.java
+++ b/test/jalview/gui/PopupMenuTest.java
@@ -91,6 +91,8 @@ public class PopupMenuTest
   public void setUp() throws IOException
   {
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
+    Cache.initLogger();
+
     String inMenuString = ("EMBL-EBI Search | http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$"
             + SEQUENCE_ID
             + "$"
@@ -113,7 +115,7 @@ public class PopupMenuTest
             DataSourceType.PASTE, FileFormat.Fasta);
     AlignFrame af = new AlignFrame(alignment, 700, 500);
     parentPanel = new AlignmentPanel(af, af.getViewport());
-    testee = new PopupMenu(parentPanel, null, null);
+    testee = new PopupMenu(parentPanel, alignment.getSequenceAt(0), null);
     int i = 0;
     for (SequenceI seq : alignment.getSequences())
     {
@@ -492,7 +494,7 @@ public class PopupMenuTest
    * Test for adding sequence id, dbref and feature links
    */
   @Test(groups = { "Functional" })
-  public void testConstructor_links()
+  public void testBuildLinkMenu()
   {
     List<SequenceI> seqs = parentPanel.getAlignment().getSequences();
     final SequenceI seq0 = seqs.get(0);
@@ -509,11 +511,9 @@ public class PopupMenuTest
     seq1.addDBRef(new DBRefEntry("GENE3D", "1", "3.10.20.30"));
     
     /*
-     * check the Popup Menu for the first sequence
+     * check the Link Menu for the first sequence
      */
-    testee = new PopupMenu(parentPanel, seq0, noFeatures);
-    Component[] seqItems = testee.sequenceMenu.getMenuComponents();
-    JMenu linkMenu = (JMenu) seqItems[6];
+    JMenu linkMenu = PopupMenu.buildLinkMenu(seq0, noFeatures);
     assertEquals(linkText, linkMenu.getText());
     Component[] linkItems = linkMenu.getMenuComponents();
     
@@ -532,13 +532,10 @@ public class PopupMenuTest
     assertEquals("UNIPROT|P83527", ((JMenuItem) linkItems[4]).getText());
 
     /*
-     * check the Popup Menu for second sequence
+     * check the Link Menu for the second sequence
      * note dbref GENE3D is matched to link Gene3D, the latter is displayed
      */
-    testee = new PopupMenu(parentPanel, seq1, noFeatures);
-    seqItems = testee.sequenceMenu.getMenuComponents();
-    linkMenu = (JMenu) seqItems[6];
-    assertEquals(linkText, linkMenu.getText());
+    linkMenu = PopupMenu.buildLinkMenu(seq1, noFeatures);
     linkItems = linkMenu.getMenuComponents();
     assertEquals(3, linkItems.length);
     assertEquals("EMBL-EBI Search", ((JMenuItem) linkItems[0]).getText());
@@ -556,13 +553,32 @@ public class PopupMenuTest
             unmatched, "");
     Preferences.sequenceUrlLinks = factory.createUrlProvider();
 
-    testee = new PopupMenu(parentPanel, seq1, noFeatures);
-    seqItems = testee.sequenceMenu.getMenuComponents();
-    linkMenu = (JMenu) seqItems[6];
-    assertEquals(linkText, linkMenu.getText());
+    linkMenu = PopupMenu.buildLinkMenu(seq1, noFeatures);
     linkItems = linkMenu.getMenuComponents();
     assertEquals(1, linkItems.length);
     assertEquals("EMBL-EBI Search", ((JMenuItem) linkItems[0]).getText());
+
+    /*
+     * if sequence is null, only feature links are shown (alignment popup submenu)
+     */
+    linkMenu = PopupMenu.buildLinkMenu(null, noFeatures);
+    linkItems = linkMenu.getMenuComponents();
+    assertEquals(0, linkItems.length);
+
+    List<SequenceFeature> features = new ArrayList<>();
+    SequenceFeature sf = new SequenceFeature("type", "desc", 1, 20, null);
+    features.add(sf);
+    linkMenu = PopupMenu.buildLinkMenu(null, features);
+    linkItems = linkMenu.getMenuComponents();
+    assertEquals(0, linkItems.length); // feature has no links
+
+    sf.addLink("Pfam family|http://pfam.xfam.org/family/PF00111");
+    linkMenu = PopupMenu.buildLinkMenu(null, features);
+    linkItems = linkMenu.getMenuComponents();
+    assertEquals(1, linkItems.length);
+    JMenuItem item = (JMenuItem) linkItems[0];
+    assertEquals("Pfam family", item.getText());
+    // ? no way to verify URL, compiled into link's actionListener
   }
 
   @Test(groups = { "Functional" })