import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceI;
import jalview.io.AppletFormatAdapter;
import jalview.io.FormatAdapter;
// PDB.secondary structure on Sequence0
AlignmentAnnotation annotation = new AlignmentAnnotation(
- "secondary structure", "", 0);
+ "secondary structure", "", new Annotation[]
+ {});
annotation.setCalcId("PDB");
annotation.visible = true;
seqs.get(0).addAlignmentAnnotation(annotation);
parentPanel.getAlignment().addAnnotation(annotation);
// JMOL.secondary structure on Sequence0 - hidden
- annotation = new AlignmentAnnotation("secondary structure", "", 0);
+ annotation = new AlignmentAnnotation("secondary structure", "", new Annotation[]
+ {});
annotation.setCalcId("JMOL");
annotation.visible = false;
seqs.get(0).addAlignmentAnnotation(annotation);
parentPanel.getAlignment().addAnnotation(annotation);
// Jpred.SSP on Sequence0 - hidden
- annotation = new AlignmentAnnotation("SSP", "", 0);
+ annotation = new AlignmentAnnotation("SSP", "", new Annotation[]
+ {});
annotation.setCalcId("JPred");
annotation.visible = false;
seqs.get(0).addAlignmentAnnotation(annotation);
parentPanel.getAlignment().addAnnotation(annotation);
// PDB.Temp on Sequence1
- annotation = new AlignmentAnnotation("Temp", "", 0);
+ annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+ {});
annotation.setCalcId("PDB");
annotation.visible = true;
seqs.get(1).addAlignmentAnnotation(annotation);
// PDB.secondary structure on Sequence0
AlignmentAnnotation annotation = new AlignmentAnnotation(
- "secondary structure", "", 0);
+ "secondary structure", "", new Annotation[]
+ {});
annotation.setCalcId("PDB");
annotation.visible = true;
seqs.get(0).addAlignmentAnnotation(annotation);
parentPanel.getAlignment().addAnnotation(annotation);
// PDB.Temp on Sequence1
- annotation = new AlignmentAnnotation("Temp", "", 0);
+ annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+ {});
annotation.setCalcId("PDB");
annotation.visible = true;
seqs.get(1).addAlignmentAnnotation(annotation);
// PDB.secondary structure on Sequence0
AlignmentAnnotation annotation = new AlignmentAnnotation(
- "secondary structure", "", 0);
+ "secondary structure", "", new Annotation[]
+ {});
annotation.setCalcId("PDB");
annotation.visible = false;
seqs.get(0).addAlignmentAnnotation(annotation);
parentPanel.getAlignment().addAnnotation(annotation);
// PDB.Temp on Sequence1
- annotation = new AlignmentAnnotation("Temp", "", 0);
+ annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+ {});
annotation.setCalcId("PDB2");
annotation.visible = false;
seqs.get(1).addAlignmentAnnotation(annotation);