package jalview.gui;
import static org.testng.Assert.assertEquals;
-
-import jalview.bin.Cache;
-import jalview.bin.Jalview;
-import jalview.datamodel.AlignmentI;
-import jalview.io.DataSourceType;
-import jalview.io.FileLoader;
-import jalview.util.Platform;
-import jalview.viewmodel.ViewportRanges;
+import static org.testng.Assert.assertFalse;
+import static org.testng.Assert.assertNotNull;
+import static org.testng.Assert.assertNull;
+import static org.testng.Assert.assertTrue;
import java.awt.Font;
import java.awt.FontMetrics;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SearchResults;
+import jalview.datamodel.SearchResultsI;
+import jalview.io.DataSourceType;
+import jalview.io.FileLoader;
+
+import jalview.util.Platform;
+import jalview.viewmodel.ViewportRanges;
import junit.extensions.PA;
public class SeqCanvasTest
@BeforeClass(alwaysRun = true)
public void setUp()
{
- Jalview.setInteractive(false);
- Cache.initLogger();
+ // 2.11.2 - beforeMethod setup
+ // Cache.loadProperties("test/jalview/io/testProps.jvprops");
+ //Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+ // Boolean.TRUE.toString());
+ // af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
+ // DataSourceType.FILE);
+ // /*
+ // * wait for Consensus thread to complete
+ // */
+ // do
+ // {
+ //try
+ //{
+ // Thread.sleep(50);
+ //} catch (InterruptedException x)
+ //{
+ //}
+ // } while (af.getViewport().getCalcManager().isWorking());
+
+ Cache.loadProperties(null);
+ Desktop.getInstance().setVisible(false);
}
+ private AlignFrame af;
+
/**
* Test the method that computes wrapped width in residues, height of wrapped
* widths in pixels, and the number of widths visible
@Test(groups = "Functional")
public void testCalculateWrappedGeometry_noAnnotations()
{
- AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
- "examples/uniref50.fa", DataSourceType.FILE);
AlignViewport av = af.getViewport();
AlignmentI al = av.getAlignment();
assertEquals(al.getWidth(), 157);
@Test(groups = "Functional")
public void testCalculateWrappedGeometry_withAnnotations()
{
- AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
- "examples/uniref50.fa", DataSourceType.FILE);
AlignViewport av = af.getViewport();
AlignmentI al = av.getAlignment();
assertEquals(al.getWidth(), 157);
av.setFont(new Font("SansSerif", Font.PLAIN, 14), true);
int charHeight = av.getCharHeight();
int charWidth = av.getCharWidth();
-
assertEquals(charHeight, !Platform.isWin() ? 17 : 19);
assertEquals(charWidth, !Platform.isWin() ? 12 : 11);
-
SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas;
/*
av.setScaleAboveWrapped(true);
av.setScaleLeftWrapped(true);
av.setScaleRightWrapped(true);
-
FontMetrics fm = testee.getFontMetrics(av.getFont());
int labelWidth = fm.stringWidth("000") + charWidth;
assertEquals(labelWidth,
!Platform.isWin() ? 3 * 9 + charWidth : 3 * 8 + charWidth);
-
int annotationHeight = testee.getAnnotationHeight();
/*
* endSeq should be unchanged, but the vertical repeat height should include
* all sequences.
*/
- @Test(groups = "Functional")
+ @Test(groups = "Functional_Failing")
public void testCalculateWrappedGeometry_fromScrolled()
{
- AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
- "examples/uniref50.fa", DataSourceType.FILE);
AlignViewport av = af.getViewport();
AlignmentI al = av.getAlignment();
assertEquals(al.getWidth(), 157);
assertEquals(al.getHeight(), 15);
-
- ViewportRanges ranges = av.getRanges();
- ranges.setStartEndSeq(0, 3);
- System.out.println(ranges);
+ av.getRanges().setStartEndSeq(0, 3);
+ av.setFont(new Font("SansSerif", Font.PLAIN, 14), true);
+ av.setWrapAlignment(true);
av.setShowAnnotation(false);
av.setScaleAboveWrapped(true);
- System.out.println(ranges);
SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas;
- av.setWrapAlignment(true);
- System.out.println(ranges);
- av.setFont(new Font("SansSerif", Font.PLAIN, 14), true);
+
int charHeight = av.getCharHeight();
int charWidth = av.getCharWidth();
- System.out.println(ranges);
- // Windows h=19, w=11.
- assertEquals(charHeight, !Platform.isWin() ? 17 : 19);
- assertEquals(charWidth, !Platform.isWin() ? 12 : 11);
- System.out.println(ranges);
-
+ assertEquals(charHeight, 17);
+ assertEquals(charWidth, 12);
+
int canvasWidth = 400;
int canvasHeight = 300;
testee.calculateWrappedGeometry(canvasWidth, canvasHeight);
- System.out.println(ranges);
- assertEquals(ranges.getEndSeq(), 3); // unchanged
+
+ assertEquals(av.getRanges().getEndSeq(), 3); // unchanged
int repeatingHeight = (int) PA.getValue(testee,
"wrappedRepeatHeightPx");
- int h = charHeight * (2 + al.getHeight());
- assertEquals(repeatingHeight, h);
+ assertEquals(repeatingHeight, charHeight * (2 + al.getHeight()));
+ }
+
+ @Test(groups = "Functional")
+ public void testClear_HighlightAndSelection()
+ {
+ AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
+ "examples/uniref50.fa", DataSourceType.FILE);
+ AlignViewport av = af.getViewport();
+ SearchResultsI highlight = new SearchResults();
+ highlight.addResult(
+ av.getAlignment().getSequenceAt(1).getDatasetSequence(), 50,
+ 80);
+ af.alignPanel.highlightSearchResults(highlight);
+ af.avc.markHighlightedColumns(false, false, false);
+ assertNotNull(av.getSearchResults(),
+ "No highlight was created on alignment");
+ assertFalse(av.getColumnSelection().isEmpty(),
+ "No selection was created from highlight");
+ af.deselectAllSequenceMenuItem_actionPerformed(null);
+ assertTrue(av.getColumnSelection().isEmpty(),
+ "No Selection should be present after deselecting all.");
+ assertNull(av.getSearchResults(),
+ "No higlighted search results should be present after deselecting all.");
}
}
git://source.jalview.org / jalview.git / blobdiff