JAL-2629 fix expected length error for hmmbuild by uniquifying sequences

[jalview.git] / test / jalview / gui / SeqPanelTest.java

diff --git a/test/jalview/gui/SeqPanelTest.java b/test/jalview/gui/SeqPanelTest.java
index b7dc250..53dff0e 100644 (file)
--- a/test/jalview/gui/SeqPanelTest.java
+++ b/test/jalview/gui/SeqPanelTest.java
@@ -21,6 +21,7 @@
 package jalview.gui;
 
 import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertTrue;
 
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
@@ -43,13 +44,14 @@ public class SeqPanelTest
   @Test(groups = "Functional")
   public void testSetStatusReturnsPosOrMinusOne()
   {
-    SequenceI seq1 = new Sequence("Seq1", "ABCDEFGHIJ");
-    SequenceI seq2 = new Sequence("Seq2", "AB--EFGHIJ");
+    SequenceI seq1 = new Sequence("Seq1", "AACDE");
+    SequenceI seq2 = new Sequence("Seq2", "AA--E");
     AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
     AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
             al.getHeight());
     AlignmentI visAl = alignFrame.getViewport().getAlignment();
     // Test either side of gap
+    // This first assert fails due to JAL-2563
     assertEquals(
             alignFrame.alignPanel.getSeqPanel().setStatusMessage(
                     visAl.getSequenceAt(1), 1, 1), 2);
@@ -64,4 +66,21 @@ public class SeqPanelTest
             alignFrame.alignPanel.getSeqPanel().setStatusMessage(
                     visAl.getSequenceAt(1), 3, 1), -1);
   }
+
+  @Test(groups = "Functional")
+  public void testAmbiguousAminoAcidGetsStatusMessage()
+  {
+    SequenceI seq1 = new Sequence("Seq1", "ABCDE");
+    SequenceI seq2 = new Sequence("Seq2", "AB--E");
+    AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
+    AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
+            al.getHeight());
+    AlignmentI visAl = alignFrame.getViewport().getAlignment();
+    // Test either side of gap
+    // This first assert fails due to JAL-2563
+    assertEquals(
+            alignFrame.alignPanel.getSeqPanel().setStatusMessage(
+                    visAl.getSequenceAt(1), 1, 1), 2);
+    assertTrue(alignFrame.statusBar.getText().contains("(2)"));
+  }
 }