+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertTrue;
+import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertTrue;
+
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
-import jalview.ws.dbsources.PDBRestClient.PDBDocField;
-import java.util.ArrayList;
-import java.util.List;
import java.util.Vector;
-import org.junit.After;
-import org.junit.Before;
-import org.junit.Test;
+import org.testng.annotations.AfterMethod;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
public class StructureChooserTest
{
Sequence seq;
- @Before
+ @BeforeMethod(alwaysRun = true)
public void setUp() throws Exception
{
- seq = new Sequence("Test_Seq", "ABCDEFGHIJKLMNOPQRSTUVWXYZ", 1, 26);
+ seq = new Sequence("PDB|4kqy|4KQY|A", "ABCDEFGHIJKLMNOPQRSTUVWXYZ", 1,
+ 26);
seq.setDatasetSequence(seq);
for (int x = 1; x < 5; x++)
{
seq.setPDBId(pdbIds);
}
- @After
+ @AfterMethod
public void tearDown() throws Exception
{
seq = null;
}
- @Test
- public void getPDBIdColumIndexTest()
- {
- List<PDBDocField> wantedFields = new ArrayList<PDBDocField>();
- wantedFields.add(PDBDocField.MOLECULE_TYPE);
- wantedFields.add(PDBDocField.GENUS);
- wantedFields.add(PDBDocField.GENE_NAME);
- wantedFields.add(PDBDocField.TITLE);
- wantedFields.add(PDBDocField.PDB_ID);
- assertEquals(5, StructureChooser.getPDBIdColumIndex(wantedFields));
- }
-
- @Test
+ @Test(groups = { "Functional" })
public void buildQueryTest()
{
+ String query = StructureChooser.buildQuery(seq);
+ System.out.println(">>>>>>>>>> query : " + query);
assertEquals(
- "1tim OR text:XYZ_1 OR text:XYZ_2 OR text:XYZ_3 OR text:XYZ_4",
- StructureChooser.buildQuery(seq));
+ "4kqy OR text:1tim OR text:XYZ_1 OR text:XYZ_2 OR text:XYZ_3 OR text:XYZ_4",
+ query);
}
- @Test
+ @Test(groups = { "Functional" })
public void populateFilterComboBoxTest()
{
- SequenceI[] selectedSeqs = new SequenceI[]
- { seq };
- StructureChooser sc = new StructureChooser(selectedSeqs, seq,
- null);
+ SequenceI[] selectedSeqs = new SequenceI[] { seq };
+ StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.populateFilterComboBox();
int optionsSize = sc.getCmbFilterOption().getItemCount();
- assertEquals(2, optionsSize); // if structures are not discovered then don't
+ assertEquals(3, optionsSize); // if structures are not discovered then don't
// populate filter options
sc.setStructuresDiscovered(true);
sc.populateFilterComboBox();
optionsSize = sc.getCmbFilterOption().getItemCount();
- assertTrue(optionsSize > 2); // if structures are found, filter options
+ assertTrue(optionsSize > 3); // if structures are found, filter options
// should be populated
}
- @Test
+ @Test(groups = { "Functional" })
public void fetchStructuresInfoTest()
{
- SequenceI[] selectedSeqs = new SequenceI[]
- { seq };
+ SequenceI[] selectedSeqs = new SequenceI[] { seq };
StructureChooser sc = new StructureChooser(selectedSeqs, seq, null);
sc.fetchStructuresMetaData();
assertTrue(sc.getDiscoveredStructuresSet() != null);