Sequence seq, upSeq, upSeq_insulin, upSeq_r1ab;
+ private Sequence upSeq_fer1_maize;
+
// same set up as for structurechooser test
@BeforeMethod(alwaysRun = true)
upSeq_r1ab
.addDBRef(new DBRefEntry("UNIPROT", "0", "P0DTD1", null, true));
upSeq_r1ab.createDatasetSequence();
+ upSeq_fer1_maize = new Sequence("FER1_MAIZE",
+ "MATVLGSPRAPAFFFSSSSLRAAPAPTAVALPAAKVGIMGRSASSRRRLRAQATYNVKLITPEGE"
+ + "VELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDV"
+ + "VIETHKEEELTGA");
+ upSeq_fer1_maize.setDescription("Feredoxin 1 Maize");
+ upSeq_fer1_maize
+ .addDBRef(new DBRefEntry("UNIPROT", "0", "P27787", null, true));
+ upSeq_fer1_maize.createDatasetSequence();
}
seq = null;
upSeq = null;
upSeq_r1ab = null;
+ upSeq_fer1_maize = null;
}
@SuppressWarnings("deprecation")
.getSearchSummary().size());
// NB Could have race condition here
List<String> pdb_Queries = tdbquery.buildPDBFTSQueryFor(upResponse);
+ assertTrue(pdb_Queries.size() > 0);
for (String pdb_Query : pdb_Queries)
{
assertTrue(pdb_Query.trim().length() > 0);
public Object[][] testUpSeqs() throws Exception
{
setUp();
- return new Object[][] { { upSeq }, { upSeq_insulin }, { upSeq_r1ab } };
+ return new Object[][] { { upSeq }, { upSeq_insulin }, { upSeq_r1ab },
+ { upSeq_fer1_maize } };
}
@Test(groups = { "Functional" })