JAL-2937 working Cygwin bash execution of hmmbuild on Windows

[jalview.git] / test / jalview / hmmer / HMMERTest.java

diff --git a/test/jalview/hmmer/HMMERTest.java b/test/jalview/hmmer/HMMERTest.java
index 8f96d04..109575c 100644 (file)
--- a/test/jalview/hmmer/HMMERTest.java
+++ b/test/jalview/hmmer/HMMERTest.java
@@ -100,7 +100,7 @@ public class HMMERTest {
 
   public void testHMMAlign()
   {
-    HMMAlign thread = new HMMAlign(frame,
+    HmmerCommand thread = new HMMAlign(frame,
             new ArrayList<ArgumentI>());
     thread.run();