JAL-2629 removed SequenceI.get/setLastPosition and related code

[jalview.git] / test / jalview / hmmer / HMMERTest.java

diff --git a/test/jalview/hmmer/HMMERTest.java b/test/jalview/hmmer/HMMERTest.java
index 7707dca..c922133 100644 (file)
--- a/test/jalview/hmmer/HMMERTest.java
+++ b/test/jalview/hmmer/HMMERTest.java
@@ -2,6 +2,7 @@ package jalview.hmmer;
 
 import static org.testng.Assert.assertEquals;
 import static org.testng.Assert.assertNotEquals;
+import static org.testng.Assert.assertNotNull;
 import static org.testng.Assert.fail;
 
 import jalview.bin.Jalview;
@@ -99,12 +100,11 @@ public class HMMERTest {
       fail();
     }
 
-    AlignFrame frame = Desktop.getAlignFrames()[0];
-    AlignmentI al = frame.getViewport().getAlignment();
+    AlignFrame fr = Desktop.getAlignFrames()[0];
+    AlignmentI al = fr.getViewport().getAlignment();
     assertNotEquals(al, null);
-    List<SequenceI> hmmSeqs = al.getHMMConsensusSequences(false);
-    assertNotEquals(hmmSeqs, null);
-
+    List<SequenceI> hmmSeqs = al.getHMMConsensusSequences();
+    assertNotNull(hmmSeqs);
   }
 }