+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.io;
import static org.testng.AssertJUnit.assertEquals;
*
* @throws Exception
*/
- @BeforeMethod(alwaysRun = true)
+ @BeforeMethod(alwaysRun = true)
public void setup() throws Exception
{
Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
.get(0).getId();
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkNoDuplicates()
{
// not strictly a requirement, but strange things may happen if multiple
{
for (int q = p + 1; q < avec.length; q++)
{
- Assert.assertNotEquals(
- "Found a duplicate annotation row " + avec[p].label,
- avec[p], avec[q]);
+ Assert.assertNotEquals("Found a duplicate annotation row "
+ + avec[p].label, avec[p], avec[q]);
}
}
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkPDBannotationSource()
{
/**
* Check sequence features have been added
*/
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkPDBSequenceFeatures()
{
/*
assertEquals("TYR: 314 1gaqC", sf[295].getDescription());
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void checkAnnotationWiring()
{
assertTrue(al.getAlignmentAnnotation() != null);
}
- @Test(groups ={ "Functional" })
+ @Test(groups = { "Functional" })
public void testJalviewProjectRelocationAnnotation() throws Exception
{
sq = sq.getDatasetSequence();
}
assertNotNull(sq.getAllPDBEntries());
- assertEquals("Expected only one PDB ID", sq.getAllPDBEntries().size(), 1);
+ assertEquals("Expected only one PDB ID",
+ sq.getAllPDBEntries().size(), 1);
for (PDBEntry pdbentry : sq.getAllPDBEntries())
{
System.err.println("PDB Entry " + pdbentry.getId() + " "
&& MCview.PDBfile.isCalcIdHandled(ana.getCalcId()))
{
exists = true;
- if (MCview.PDBfile.isCalcIdForFile(ana,
- pdbentry.getId()))
+ if (MCview.PDBfile.isCalcIdForFile(ana, pdbentry.getId()))
{
found = true;
}