JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

[jalview.git] / test / jalview / io / BioJsHTMLOutputTest.java

diff --git a/test/jalview/io/BioJsHTMLOutputTest.java b/test/jalview/io/BioJsHTMLOutputTest.java
index 8d9de77..63485a6 100644 (file)
--- a/test/jalview/io/BioJsHTMLOutputTest.java
+++ b/test/jalview/io/BioJsHTMLOutputTest.java
@@ -1,23 +1,70 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.io;
 
-import java.io.IOException;
+import jalview.gui.JvOptionPane;
+import jalview.json.binding.biojs.BioJSReleasePojo;
+import jalview.json.binding.biojs.BioJSRepositoryPojo;
 
-import org.junit.Assert;
-import org.junit.Test;
+import java.io.File;
+import java.io.IOException;
+import java.net.MalformedURLException;
+import java.net.URISyntaxException;
+import java.net.URL;
+import java.net.URLConnection;
+import java.util.TreeMap;
 
+import org.testng.Assert;
+import org.testng.AssertJUnit;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
 
 public class BioJsHTMLOutputTest
 {
 
-  @Test
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+  @Test(groups = { "Functional" })
   public void getJalviewAlignmentAsJsonString()
   {
-    BioJsHTMLOutput bioJsHtmlOutput = new BioJsHTMLOutput(null, null);
     String bjsTemplate = null;
     try
     {
-      bjsTemplate = BioJsHTMLOutput
-              .getBioJsTemplateAsString(bioJsHtmlOutput);
+      BioJsHTMLOutput.updateBioJS();
+      try
+      {
+        // allow the update some three seconds to complete before getting latest
+        // version of BioJS template
+        Thread.sleep(1000 * 3);
+      } catch (InterruptedException e)
+      {
+        e.printStackTrace();
+      }
+      bjsTemplate = HTMLOutput.readFileAsString(
+              BioJsHTMLOutput.getCurrentBJSTemplateFile());
       // System.out.println(bjsTemplate);
     } catch (IOException e)
     {
@@ -25,4 +72,91 @@ public class BioJsHTMLOutputTest
     }
     Assert.assertNotNull(bjsTemplate);
   }
+
+  @Test(
+    groups =
+    { "Functional" },
+    expectedExceptions = NullPointerException.class)
+  public void expectedNullPointerException()
+  {
+    try
+    {
+      BioJsHTMLOutput.refreshVersionInfo(null);
+    } catch (URISyntaxException e)
+    {
+      AssertJUnit.fail("Expception occured while testing!");
+      e.printStackTrace();
+    }
+  }
+
+  @Test(groups = { "Functional" })
+  public void getBioJsMSAVersions()
+  {
+    TreeMap<String, File> versions = null;
+    try
+    {
+      BioJsHTMLOutput.refreshVersionInfo(
+              BioJsHTMLOutput.BJS_TEMPLATES_LOCAL_DIRECTORY);
+      versions = BioJsHTMLOutput.getBioJsMSAVersions();
+    } catch (URISyntaxException e)
+    {
+      AssertJUnit.fail("Expception occured while testing!");
+      e.printStackTrace();
+    }
+    AssertJUnit.assertNotNull("No versions found", versions);
+    AssertJUnit.assertTrue("One or more Templates required",
+            versions.size() > 0);
+    System.out
+            .println("Number of discovered versions : " + versions.size());
+    for (String v : versions.keySet())
+    {
+      System.out.println("version : " + v);
+      System.out.println("File : " + versions.get(v));
+    }
+
+    System.out.println("\nCurrent latest version : "
+            + BioJsHTMLOutput.getCurrentBJSTemplateFile());
+    AssertJUnit.assertNotNull("Latest BioJsMSA version NOT found!",
+            BioJsHTMLOutput.getCurrentBJSTemplateFile());
+
+  }
+
+  @Test(groups = { "Network" })
+  public void testBioJsUpdate()
+  {
+    String url = BioJsHTMLOutput.BJS_TEMPLATE_GIT_REPO;
+    AssertJUnit.assertTrue("URL not reacable : " + url,
+            urlIsReachable(url));
+    String response = BioJsHTMLOutput.getURLContentAsString(url);
+    AssertJUnit.assertNotNull("Null response read from url!", response);
+    BioJSRepositoryPojo repository = new BioJSRepositoryPojo(response);
+    System.out.println(">>> description : " + repository.getDescription());
+    System.out.println(
+            ">>> latest version : " + repository.getLatestReleaseVersion());
+    System.out
+            .println(">>> repo count : " + repository.getReleases().size());
+    for (BioJSReleasePojo release : repository.getReleases())
+    {
+      System.out.println("repo type : " + release.getType());
+      System.out.println("url : " + release.getUrl());
+      System.out.println("release version : " + release.getVersion());
+    }
+  }
+
+  private static boolean urlIsReachable(String urlString)
+  {
+    try
+    {
+      final URL url = new URL(urlString);
+      final URLConnection conn = url.openConnection();
+      conn.connect();
+      return true;
+    } catch (MalformedURLException e)
+    {
+      throw new RuntimeException(e);
+    } catch (IOException e)
+    {
+      return false;
+    }
+  }
 }