JAL-1760 JAL-1641 Serialisation of Hidden Seqs and Cols in JSON output. Added ability...

[jalview.git] / test / jalview / io / BioJsHTMLOutputTest.java

diff --git a/test/jalview/io/BioJsHTMLOutputTest.java b/test/jalview/io/BioJsHTMLOutputTest.java
index 8d9de77..ac2b599 100644 (file)
--- a/test/jalview/io/BioJsHTMLOutputTest.java
+++ b/test/jalview/io/BioJsHTMLOutputTest.java
@@ -1,6 +1,15 @@
 package jalview.io;
 
+import jalview.json.binding.v1.BioJSReleasePojo;
+import jalview.json.binding.v1.BioJSRepositoryPojo;
+
+import java.io.File;
 import java.io.IOException;
+import java.net.MalformedURLException;
+import java.net.URISyntaxException;
+import java.net.URL;
+import java.net.URLConnection;
+import java.util.TreeMap;
 
 import org.junit.Assert;
 import org.junit.Test;
@@ -12,12 +21,20 @@ public class BioJsHTMLOutputTest
   @Test
   public void getJalviewAlignmentAsJsonString()
   {
-    BioJsHTMLOutput bioJsHtmlOutput = new BioJsHTMLOutput(null, null);
     String bjsTemplate = null;
     try
     {
-      bjsTemplate = BioJsHTMLOutput
-              .getBioJsTemplateAsString(bioJsHtmlOutput);
+      BioJsHTMLOutput.updateBioJS();
+      try
+      {
+        // allow the update some three seconds to complete before getting latest
+        // version of BioJS template
+        Thread.sleep(1000 * 3);
+      } catch (InterruptedException e)
+      {
+        e.printStackTrace();
+      }
+      bjsTemplate = BioJsHTMLOutput.getBioJsTemplateAsString();
       // System.out.println(bjsTemplate);
     } catch (IOException e)
     {
@@ -25,4 +42,88 @@ public class BioJsHTMLOutputTest
     }
     Assert.assertNotNull(bjsTemplate);
   }
+
+  @Test(expected = NullPointerException.class)
+  public void expectedNullPointerException()
+  {
+    try
+    {
+      BioJsHTMLOutput.refreshBioJSVersionsInfo(null);
+    } catch (URISyntaxException e)
+    {
+      Assert.fail("Expception occured while testing!");
+      e.printStackTrace();
+    }
+  }
+
+  @Test
+  public void getBioJsMSAVersions()
+  {
+    TreeMap<String, File> versions = null;
+    try
+    {
+      BioJsHTMLOutput
+              .refreshBioJSVersionsInfo(BioJsHTMLOutput.BJS_TEMPLATES_LOCAL_DIRECTORY);
+      versions = BioJsHTMLOutput.getBioJsMSAVersions();
+    } catch (URISyntaxException e)
+    {
+      Assert.fail("Expception occured while testing!");
+      e.printStackTrace();
+    }
+    Assert.assertNotNull("No versions found", versions);
+    Assert.assertTrue("One or more Templates required", versions.size() > 0);
+    System.out
+            .println("Number of discovered versions : "
+            + versions.size());
+    for (String v : versions.keySet())
+    {
+      System.out.println("version : " + v);
+      System.out.println("File : " + versions.get(v));
+    }
+
+    System.out.println("\nCurrent latest version : "
+            + BioJsHTMLOutput.getCurrentBJSTemplateFile());
+    Assert.assertNotNull("Latest BioJsMSA version NOT found!",
+            BioJsHTMLOutput.getCurrentBJSTemplateFile());
+
+  }
+
+  @Test
+  public void testBioJsUpdate()
+  {
+    String url = BioJsHTMLOutput.BJS_TEMPLATE_GIT_REPO;
+    Assert.assertTrue("URL not reacable : " + url, urlIsReachable(url));
+    String response = BioJsHTMLOutput.getURLContentAsString(url);
+    Assert.assertNotNull("Null response read from url!", response);
+    BioJSRepositoryPojo repository = new BioJSRepositoryPojo(response);
+    System.out.println(">>> description : " + repository.getDescription());
+    System.out
+.println(">>> latest version : "
+            + repository.getLatestReleaseVersion());
+    System.out.println(">>> repo count : "
+            + repository.getReleases().size());
+    for (BioJSReleasePojo release : repository.getReleases())
+    {
+      System.out.println("repo type : " + release.getType());
+      System.out.println("url : " + release.getUrl());
+      System.out.println("release version : " + release.getVersion());
+    }
+  }
+
+  private static boolean urlIsReachable(String urlString)
+  {
+    try
+    {
+      final URL url = new URL(urlString);
+      final URLConnection conn = url.openConnection();
+      conn.connect();
+      return true;
+    } catch (MalformedURLException e)
+    {
+      throw new RuntimeException(e);
+    } catch (IOException e)
+    {
+      return false;
+    }
+  }
 }