JAL-2079 update examples to new pfam.xfam.org domain
[jalview.git] / test / jalview / io / FeaturesFileTest.java
index 81d5b05..73d8826 100644 (file)
@@ -104,7 +104,7 @@ public class FeaturesFileTest
     sf = sfs[4];
     assertEquals("Fer2 Status: True Positive Pfam 8_8%LINK%",
             sf.description);
-    assertEquals("Pfam 8_8|http://pfam.sanger.ac.uk/family/PF00111",
+    assertEquals("Pfam 8_8|http://pfam.xfam.org/family/PF00111",
             sf.links.get(0).toString());
     assertEquals(8, sf.begin);
     assertEquals(83, sf.end);
@@ -428,7 +428,7 @@ public class FeaturesFileTest
             + "STARTGROUP\tuniprot\n"
             + "Iron\tFER_CAPAA\t-1\t39\t39\tMETAL\n"
             + "Turn\tFER_CAPAA\t-1\t36\t38\tGAMMA-TURN\n"
-            + "<html>Pfam domain<a href=\"http://pfam.sanger.ac.uk/family/PF00111\">Pfam_3_4</a></html>\tFER_CAPAA\t-1\t20\t20\tPfam\n"
+            + "<html>Pfam domain<a href=\"http://pfam.xfam.org/family/PF00111\">Pfam_3_4</a></html>\tFER_CAPAA\t-1\t20\t20\tPfam\n"
             + "ENDGROUP\tuniprot\n";
     FeaturesFile featuresFile = new FeaturesFile(features,
             FormatAdapter.PASTE);
@@ -478,7 +478,7 @@ public class FeaturesFileTest
             + "\nSTARTGROUP\tuniprot\n"
             + "Iron\tFER_CAPAA\t-1\t39\t39\tMETAL\t0.0\n"
             + "Turn\tFER_CAPAA\t-1\t36\t38\tGAMMA-TURN\t0.0\n"
-            + "<html>Pfam domain<a href=\"http://pfam.sanger.ac.uk/family/PF00111\">Pfam_3_4</a></html>\tFER_CAPAA\t-1\t20\t20\tPfam\t0.0\n"
+            + "<html>Pfam domain<a href=\"http://pfam.xfam.org/family/PF00111\">Pfam_3_4</a></html>\tFER_CAPAA\t-1\t20\t20\tPfam\t0.0\n"
             + "ENDGROUP\tuniprot\n";
     assertEquals(expected, exported);
   }