Merge branch 'develop' into features/JAL-2094_colourInterface

[jalview.git] / test / jalview / io / FileIOTester.java

diff --git a/test/jalview/io/FileIOTester.java b/test/jalview/io/FileIOTester.java
index 1f3df1f..2eb3703 100644 (file)
--- a/test/jalview/io/FileIOTester.java
+++ b/test/jalview/io/FileIOTester.java
@@ -20,13 +20,14 @@
  */
 package jalview.io;
 
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.Test;
-import org.testng.annotations.BeforeClass;
-import org.testng.AssertJUnit;
 import java.io.File;
 import java.io.IOException;
 
+import org.testng.AssertJUnit;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
 /**
  * @author jimp
  * 
@@ -37,7 +38,7 @@ public class FileIOTester
   /**
    * @throws java.lang.Exception
    */
-  @BeforeClass
+  @BeforeClass(alwaysRun = true)
   public static void setUpBeforeClass() throws Exception
   {
   }
@@ -45,7 +46,7 @@ public class FileIOTester
   /**
    * @throws java.lang.Exception
    */
-  @AfterClass
+  @AfterClass(alwaysRun = true)
   public static void tearDownAfterClass() throws Exception
   {
   }
@@ -66,13 +67,14 @@ public class FileIOTester
 
   private void assertValidFormat(String fmt, String src, FileParse fp)
   {
-    AssertJUnit.assertTrue("Couldn't resolve " + src + " as a valid file", fp.isValid());
-    String type = new IdentifyFile().Identify(fp);
+    AssertJUnit.assertTrue("Couldn't resolve " + src + " as a valid file",
+            fp.isValid());
+    String type = new IdentifyFile().identify(fp);
     AssertJUnit.assertTrue("Data from '" + src + "' Expected to be '" + fmt
             + "' identified as '" + type + "'", type.equalsIgnoreCase(fmt));
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testStarsInFasta1() throws IOException
   {
     String uri;
@@ -81,7 +83,7 @@ public class FileIOTester
     assertValidFormat("FASTA", uri, fp);
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testStarsInFasta2() throws IOException
   {
     String uri;
@@ -90,7 +92,7 @@ public class FileIOTester
     assertValidFormat("FASTA", uri, fp);
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testGzipIo() throws IOException
   {
     String uri;
@@ -99,7 +101,7 @@ public class FileIOTester
     assertValidFormat("FASTA", uri, fp);
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testGziplocalFileIO() throws IOException
   {
     String filepath;
@@ -108,7 +110,7 @@ public class FileIOTester
     assertValidFormat("FASTA", filepath, fp);
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testNonGzipURLIO() throws IOException
   {
     String uri;
@@ -117,7 +119,7 @@ public class FileIOTester
     assertValidFormat("FASTA", uri, fp);
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testNonGziplocalFileIO() throws IOException
   {
     String filepath;