* special case: MSF always uses '.' as gap character
*/
sequenceString = adjustForGapTreatment(sequenceString, gap, format);
- assertEquals(
- String.format("Sequence %d: %s", i, seqs[i].getName()),
+ assertEquals(String.format("Sequence %d: %s", i, seqs[i].getName()),
seqs[i].getSequenceAsString(), sequenceString);
i++;
}
} catch (IOException e)
{
- fail(String
- .format("Format %s failed with %s", format, e.getMessage()));
+ fail(String.format("Format %s failed with %s", format,
+ e.getMessage()));
}
}
static Object[][] getFormats()
{
List<FileFormatI> both = new ArrayList<FileFormatI>();
- for (FileFormat format : FileFormat.values())
+ for (FileFormatI format : FileFormats.getInstance().getFormats())
{
if (format.isReadable() && format.isWritable()
&& format.isTextFormat())