Merge branch 'bug/JAL-3806_mappingCoversSequence_for2112' into develop

[jalview.git] / test / jalview / io / GenBankFileTest.java

diff --git a/test/jalview/io/GenBankFileTest.java b/test/jalview/io/GenBankFileTest.java
index 89f0d0e..20d458f 100644 (file)
--- a/test/jalview/io/GenBankFileTest.java
+++ b/test/jalview/io/GenBankFileTest.java
@@ -42,7 +42,7 @@ public class GenBankFileTest
     File dataFile = new File("test/jalview/io/J03321.gb");
     FileParse fp = new FileParse(dataFile.getAbsolutePath(),
             DataSourceType.FILE);
-    FlatFile parser = new GenBankFile(fp, "GenBankTest");
+    EMBLLikeFlatFile parser = new GenBankFile(fp, "GenBankTest");
     List<SequenceI> seqs = parser.getSeqs();
 
     assertEquals(seqs.size(), 1);
@@ -193,7 +193,7 @@ public class GenBankFileTest
     assertTrue(seqString.endsWith("FKQKS"));
     map = mapping.getMap();
     assertEquals(map.getFromLowest(), 6045);
-    assertEquals(map.getFromHighest(), 6788);
+    assertEquals(map.getFromHighest(), 6785); // excludes stop at 6788
     assertEquals(map.getToLowest(), 1);
     assertEquals(map.getToHighest(), 247);
     assertEquals(map.getFromRatio(), 3);