JAL-2388 Working hidden regions hide/show in desktop

[jalview.git] / test / jalview / io / JSONFileTest.java

diff --git a/test/jalview/io/JSONFileTest.java b/test/jalview/io/JSONFileTest.java
index a18f395..1917097 100644 (file)
--- a/test/jalview/io/JSONFileTest.java
+++ b/test/jalview/io/JSONFileTest.java
@@ -27,12 +27,13 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
+import jalview.gui.JvOptionPane;
 import jalview.json.binding.biojson.v1.ColourSchemeMapper;
 import jalview.schemes.ColourSchemeI;
 
@@ -44,6 +45,7 @@ import java.util.List;
 import org.testng.Assert;
 import org.testng.AssertJUnit;
 import org.testng.annotations.AfterTest;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.BeforeTest;
 import org.testng.annotations.Test;
@@ -51,6 +53,13 @@ import org.testng.annotations.Test;
 public class JSONFileTest
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   private int TEST_SEQ_HEIGHT = 0;
 
   private int TEST_GRP_HEIGHT = 0;
@@ -69,7 +78,7 @@ public class JSONFileTest
 
   private HashMap<String, SequenceGroup> expectedGrps = new HashMap<String, SequenceGroup>();
 
-  private ColumnSelection expectedColSel = new ColumnSelection();
+  private HiddenColumns expectedColSel = new HiddenColumns();
 
   private SequenceI[] expectedHiddenSeqs = new SequenceI[1];
 
@@ -128,7 +137,7 @@ public class JSONFileTest
             null, true, true, false, 21, 29);
     ColourSchemeI scheme = ColourSchemeMapper.getJalviewColourScheme(
             "zappo", seqGrp);
-    seqGrp.cs = scheme;
+    seqGrp.cs.setColourScheme(scheme);
     seqGrp.setShowNonconserved(false);
     seqGrp.setDescription(null);
 
@@ -182,7 +191,7 @@ public class JSONFileTest
     TEST_SEQ_HEIGHT = expectedSeqs.size();
     TEST_GRP_HEIGHT = expectedGrps.size();
     TEST_ANOT_HEIGHT = expectedAnnots.size();
-    TEST_CS_HEIGHT = expectedColSel.getHiddenColumns().size();
+    TEST_CS_HEIGHT = expectedColSel.getHiddenRegions().size();
 
     AlignExportSettingI exportSettings = new AlignExportSettingI()
     {
@@ -231,7 +240,7 @@ public class JSONFileTest
       jf = (JSONFile) formatAdapter.getAlignFile();
 
       AlignFrame af = new AlignFrame(alignment, jf.getHiddenSequences(),
-              jf.getColumnSelection(), AlignFrame.DEFAULT_WIDTH,
+              jf.getHiddenColumns(), AlignFrame.DEFAULT_WIDTH,
               AlignFrame.DEFAULT_HEIGHT);
       af.getViewport().setShowSequenceFeatures(jf.isShowSeqFeatures());
       String colourSchemeName = jf.getGlobalColourScheme();
@@ -300,13 +309,13 @@ public class JSONFileTest
   @Test(groups = { "Functional" })
   public void hiddenColsTest()
   {
-    ColumnSelection cs = testJsonFile.getColumnSelection();
+    HiddenColumns cs = testJsonFile.getHiddenColumns();
     Assert.assertNotNull(cs);
-    Assert.assertNotNull(cs.getHiddenColumns());
-    List<int[]> hiddenCols = cs.getHiddenColumns();
+    Assert.assertNotNull(cs.getHiddenRegions());
+    List<int[]> hiddenCols = cs.getHiddenRegions();
     Assert.assertEquals(hiddenCols.size(), TEST_CS_HEIGHT);
     Assert.assertEquals(hiddenCols.get(0), expectedColSel
-            .getHiddenColumns().get(0),
+            .getHiddenRegions().get(0),
             "Mismatched hidden columns!");
   }