*/
package jalview.io;
-import org.testng.annotations.Factory;
import static org.testng.ConversionUtils.wrapDataProvider;
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.Test;
-import org.testng.annotations.BeforeClass;
-import org.testng.Assert;
-import org.testng.AssertJUnit;
-import java.util.Arrays;
-import java.util.Collection;
-import java.util.Iterator;
-import java.util.Vector;
import jalview.analysis.NJTree;
import jalview.analysis.SequenceIdMatcher;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceNode;
-import org.jmol.util.ArrayUtil;
+import java.util.Arrays;
+import java.util.Collection;
+import java.util.Vector;
+
import org.junit.runners.Parameterized.Parameters;
+import org.testng.Assert;
+import org.testng.AssertJUnit;
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Factory;
+import org.testng.annotations.Test;
/**
* @author jimp
{
}
- @Test
+ @Test(groups ={ "Functional" })
public void testTreeIO() throws Exception
{
String stage = "Init", treename = " '" + name + "' :";
{
olsqs[i] = (SequenceI) ((SequenceNode) oseqs.get(i)).element();
}
- nseqs = (Vector) new NJTree(new SequenceI[0], nf_regen).findLeaves(
+ nseqs = new NJTree(new SequenceI[0], nf_regen).findLeaves(
nf_regen.getTree(), new Vector());
AssertJUnit.assertTrue(stage + "No nodes in regerated tree.", nseqs.size() > 0);
SequenceI[] nsqs = new SequenceI[nseqs.size()];