Merge branch 'develop' into trialMerge

[jalview.git] / test / jalview / io / PfamFormatInputTest.java

diff --git a/test/jalview/io/PfamFormatInputTest.java b/test/jalview/io/PfamFormatInputTest.java
index 17f38b0..52a13f6 100644 (file)
--- a/test/jalview/io/PfamFormatInputTest.java
+++ b/test/jalview/io/PfamFormatInputTest.java
@@ -43,7 +43,8 @@ public class PfamFormatInputTest
   public void testPfamFormatNoLimits() throws IOException
   {
     AlignmentI al = new AppletFormatAdapter().readFile("ASEQ"
-            + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
+            + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
+            FileFormat.Pfam);
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
     Assert.assertTrue(al.hasValidSequence(),
             "Didn't extract limits from PFAM ID");
@@ -52,9 +53,8 @@ public class PfamFormatInputTest
   @Test(groups = "Functional")
   public void testPfamFormatValidLimits() throws IOException
   {
-    AlignmentI al = new AppletFormatAdapter().readFile(
-            "ASEQ/15-25" + '\t' + "...--FFAFAFF--",
-            AppletFormatAdapter.PASTE, "PFAM");
+    AlignmentI al = new AppletFormatAdapter().readFile("ASEQ/15-25" + '\t'
+            + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam);
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
     Assert.assertTrue(al.hasValidSequence(),
             "Didn't extract limits from PFAM ID");