public void testPfamFormatNoLimits() throws IOException
{
AlignmentI al = new AppletFormatAdapter().readFile("ASEQ"
- + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
+ + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
+ FileFormat.Pfam);
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
"Didn't extract limits from PFAM ID");
@Test(groups = "Functional")
public void testPfamFormatValidLimits() throws IOException
{
- AlignmentI al = new AppletFormatAdapter().readFile(
- "ASEQ/15-25" + '\t' + "...--FFAFAFF--",
- AppletFormatAdapter.PASTE, "PFAM");
+ AlignmentI al = new AppletFormatAdapter().readFile("ASEQ/15-25" + '\t'
+ + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam);
Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
Assert.assertTrue(al.hasValidSequence(),
"Didn't extract limits from PFAM ID");