JAL-3692 parse multiline CDS location correctly

[jalview.git] / test / jalview / io / PfamFormatInputTest.java

diff --git a/test/jalview/io/PfamFormatInputTest.java b/test/jalview/io/PfamFormatInputTest.java
index fb99865..52a13f6 100644 (file)
--- a/test/jalview/io/PfamFormatInputTest.java
+++ b/test/jalview/io/PfamFormatInputTest.java
@@ -21,19 +21,30 @@
 package jalview.io;
 
 import jalview.datamodel.AlignmentI;
+import jalview.gui.JvOptionPane;
 
 import java.io.IOException;
 
 import org.testng.Assert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class PfamFormatInputTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = "Functional")
   public void testPfamFormatNoLimits() throws IOException
   {
     AlignmentI al = new AppletFormatAdapter().readFile("ASEQ"
-            + '\t' + "...--FFAFAFF--", AppletFormatAdapter.PASTE, "PFAM");
+            + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
+            FileFormat.Pfam);
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
     Assert.assertTrue(al.hasValidSequence(),
             "Didn't extract limits from PFAM ID");
@@ -42,9 +53,8 @@ public class PfamFormatInputTest
   @Test(groups = "Functional")
   public void testPfamFormatValidLimits() throws IOException
   {
-    AlignmentI al = new AppletFormatAdapter().readFile(
-            "ASEQ/15-25" + '\t' + "...--FFAFAFF--",
-            AppletFormatAdapter.PASTE, "PFAM");
+    AlignmentI al = new AppletFormatAdapter().readFile("ASEQ/15-25" + '\t'
+            + "...--FFAFAFF--", DataSourceType.PASTE, FileFormat.Pfam);
     Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
     Assert.assertTrue(al.hasValidSequence(),
             "Didn't extract limits from PFAM ID");