* or tab (or combinations) as score value delimiters
* this example includes 'guide' symbols on score rows
*/
- String data = "ScoreMatrix MyTest\n" + "ATU tx-\n"
+ String data = "ScoreMatrix MyTest (example)\n" + "ATU tx-\n"
+ "A,1.1,1.2,1.3,1.4, 1.5, 1.6, 1.7\n"
+ "T,2.1 2.2 2.3 2.4 2.5 2.6 2.7\n"
+ "U\t3.1\t3.2\t3.3\t3.4\t3.5\t3.6\t3.7\n"
ScoreMatrix sm = parser.parseMatrix();
assertNotNull(sm);
- assertEquals(sm.getName(), "MyTest");
+ assertEquals(sm.getName(), "MyTest (example)");
assertTrue(sm.isDNA());
assertFalse(sm.isProtein());
assertEquals(sm.getPairwiseScore('A', 'A'), 1.1f);