JAL-2416 revert to '*' not '-' in score matrix, handle gaps explicitly

[jalview.git] / test / jalview / io / ScoreMatrixFileTest.java

diff --git a/test/jalview/io/ScoreMatrixFileTest.java b/test/jalview/io/ScoreMatrixFileTest.java
index a98b2d6..1aa191a 100644 (file)
--- a/test/jalview/io/ScoreMatrixFileTest.java
+++ b/test/jalview/io/ScoreMatrixFileTest.java
@@ -310,7 +310,6 @@ public class ScoreMatrixFileTest
     assertFalse(sm.isDNA());
     assertTrue(sm.isProtein());
     assertEquals(20, sm.getSize());
-    assertEquals(sm.getGapIndex(), -1);
 
     assertEquals(sm.getPairwiseScore('A', 'A'), 7f);
     assertEquals(sm.getPairwiseScore('A', 'R'), -3f);
@@ -342,7 +341,6 @@ public class ScoreMatrixFileTest
   
     assertNotNull(sm);
     assertEquals(sm.getSize(), 3);
-    assertEquals(sm.getGapIndex(), -1);
     assertEquals(sm.getName(), "MyTest");
     assertEquals(sm.getDescription(), "My description");
     assertEquals(sm.getPairwiseScore('A', 'A'), 1.0f);