System.out.println(toStockholm);
// bleh - java.util.Regex sucks
assertTrue(
- Pattern.compile(".*\\s+AC\\s+P00224.*",
- java.util.regex.Pattern.DOTALL).matcher(toStockholm)
- .matches(),
+ Pattern.compile(
+ "^#=GS\\s+FER2_SPIOL(/\\d+-\\d+)?\\s+AC\\s+P00224$",
+ Pattern.MULTILINE).matcher(toStockholm)
+ .find(),
"Couldn't locate UNIPROT Accession in generated Stockholm file.");
AlignmentI fromStockholm = af.readFile(toStockholm,
DataSourceType.PASTE, FileFormat.Stockholm);