JAL-3066 Auto discover multiple sequence alignment services

[jalview.git] / test / jalview / io / StockholmFileTest.java

diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java
index e86c8ad..ac807e1 100644 (file)
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -22,17 +22,22 @@ package jalview.io;
 
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertNotNull;
+import static org.testng.AssertJUnit.assertNull;
 import static org.testng.AssertJUnit.assertTrue;
 import static org.testng.AssertJUnit.fail;
 
+import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
+import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
 
 import java.io.File;
+import java.io.IOException;
 import java.util.Arrays;
 import java.util.BitSet;
 import java.util.HashMap;
@@ -257,8 +262,8 @@ public class StockholmFileTest
           assertEquals("Threshold line not identical.",
                   aa_original[i].threshold, aa_new[i].threshold);
           // graphGroup may differ, but pattern should be the same
-          Integer o_ggrp = new Integer(aa_original[i].graphGroup + 2);
-          Integer n_ggrp = new Integer(aa_new[i].graphGroup + 2);
+          Integer o_ggrp = Integer.valueOf(aa_original[i].graphGroup + 2);
+          Integer n_ggrp = Integer.valueOf(aa_new[i].graphGroup + 2);
           BitSet orig_g = orig_groups.get(o_ggrp);
           BitSet new_g = new_groups.get(n_ggrp);
           if (orig_g == null)