JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

[jalview.git] / test / jalview / io / WindowsFileLoadAndSaveTest.java

diff --git a/test/jalview/io/WindowsFileLoadAndSaveTest.java b/test/jalview/io/WindowsFileLoadAndSaveTest.java
index b644848..2dd27b4 100644 (file)
--- a/test/jalview/io/WindowsFileLoadAndSaveTest.java
+++ b/test/jalview/io/WindowsFileLoadAndSaveTest.java
@@ -30,7 +30,6 @@ import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
-import jalview.bin.Cache;
 import jalview.datamodel.AlignmentI;
 import jalview.gui.AlignFrame;
 import jalview.gui.JvOptionPane;
@@ -69,17 +68,18 @@ public class WindowsFileLoadAndSaveTest
   @Test(groups = { "Functional" })
   public void loadAndSaveAlignment() throws IOException
   {
-    Cache.initLogger();
     File file = new File(fileName);
     File testFile = new File(testFileName);
     Files.copy(file.toPath(), testFile.toPath(),
             StandardCopyOption.REPLACE_EXISTING);
     FormatAdapter fa = new FormatAdapter();
-    AlignmentI a = fa.readFile(fileName, DataSourceType.FILE,
+    AlignmentI a = fa.readFile(testFile, DataSourceType.FILE,
             FileFormat.Fasta);
 
     AlignFrame af = new AlignFrame(a, 500, 500);
-    Assert.assertTrue(af.saveAlignment(testFileName, FileFormat.Fasta));
+    af.saveAlignment(testFileName, FileFormat.Fasta);
+
+    Assert.assertTrue(af.isSaveAlignmentSuccessful());
   }
 
   @AfterClass(alwaysRun = true)