public void testGetMappingType()
{
// protein-to-dna:
- assertSame(MappingType.PeptideToNucleotide,
+ assertSame(MappingType.PeptideToGenome,
ExonerateHelper
.getMappingType("exonerate:protein2genome:local"));
- assertSame(MappingType.PeptideToNucleotide,
+ assertSame(MappingType.PeptideToGenome,
ExonerateHelper.getMappingType("exonerate:protein2dna:local"));
// dna-to-dna:
- assertSame(MappingType.NucleotideToNucleotide,
+ assertSame(MappingType.GenomeToCdna,
ExonerateHelper.getMappingType("coding2coding"));
- assertSame(MappingType.NucleotideToNucleotide,
+ assertSame(MappingType.GenomeToCdna,
ExonerateHelper.getMappingType("coding2genome"));
- assertSame(MappingType.NucleotideToNucleotide,
+ assertSame(MappingType.GenomeToCdna,
ExonerateHelper.getMappingType("cdna2genome"));
- assertSame(MappingType.NucleotideToNucleotide,
+ assertSame(MappingType.GenomeToCdna,
ExonerateHelper.getMappingType("genome2genome"));
assertNull(ExonerateHelper.getMappingType("affine:local"));
}