JAL-4235 JAL-3599 Try and report Eclipse Product Version for jalviewjsTranspile....

[jalview.git] / test / jalview / io / gff / InterProScanHelperTest.java

diff --git a/test/jalview/io/gff/InterProScanHelperTest.java b/test/jalview/io/gff/InterProScanHelperTest.java
index bcccf35..1d08a4c 100644 (file)
--- a/test/jalview/io/gff/InterProScanHelperTest.java
+++ b/test/jalview/io/gff/InterProScanHelperTest.java
@@ -21,6 +21,7 @@
 package jalview.io.gff;
 
 import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertSame;
 import static org.testng.AssertJUnit.assertTrue;
 import static org.testng.internal.junit.ArrayAsserts.assertArrayEquals;
@@ -30,6 +31,7 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceDummy;
+import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
 
@@ -76,6 +78,16 @@ public class InterProScanHelperTest
     assertEquals(1, newseqs.size());
     assertTrue(newseqs.get(0) instanceof SequenceDummy);
     assertEquals("match$17_5_30", newseqs.get(0).getName());
+
+    assertNotNull(newseqs.get(0).getSequenceFeatures());
+    assertEquals(1, newseqs.get(0).getSequenceFeatures().size());
+    SequenceFeature sf = newseqs.get(0).getSequenceFeatures().get(0);
+    assertEquals(1, sf.getBegin());
+    assertEquals(26, sf.getEnd());
+    assertEquals("Pfam", sf.getType());
+    assertEquals("4Fe-4S dicluster domain", sf.getDescription());
+    assertEquals("InterProScan", sf.getFeatureGroup());
+
     assertEquals(1, align.getCodonFrames().size());
     AlignedCodonFrame mapping = align.getCodonFrames().iterator().next();
 
@@ -90,11 +102,11 @@ public class InterProScanHelperTest
     assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
-    assertArrayEquals(new int[] { 5, 30 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
+    assertArrayEquals(new int[] { 5, 30 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
-    assertArrayEquals(new int[] { 1, 26 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 1, 26 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
 }