DataSourceType.FILE);
assertNotNull(af, "Didn't read input file " + inFile);
af.loadJalviewDataFile(inAnnot, DataSourceType.FILE, null, null);
- assertSame(af.getViewport().getGlobalColourScheme().getClass(),
+ AlignViewport viewport = af.getViewport();
+ assertSame(viewport.getGlobalColourScheme().getClass(),
TCoffeeColourScheme.class, "Didn't set T-coffee colourscheme");
assertNotNull(
- ColourSchemeProperty.getColourScheme(
- af.getViewport().getAlignment(),
- af.getViewport().getGlobalColourScheme()
+ ColourSchemeProperty.getColourScheme(viewport,
+ viewport.getAlignment(),
+ viewport.getGlobalColourScheme()
.getSchemeName()),
"Recognise T-Coffee score from string");
af = new FileLoader().LoadFileWaitTillLoaded(tfile,
DataSourceType.FILE);
assertNotNull(af, "Failed to import new project");
- assertSame(af.getViewport().getGlobalColourScheme().getClass(),
+ assertSame(viewport.getGlobalColourScheme().getClass(),
TCoffeeColourScheme.class,
"Didn't set T-coffee colourscheme for imported project.");
System.out.println(