float[][] vals = ContactMatrix.fromFloatStringToContacts(content, sq.getLength(), sq.getLength());
assertEquals(vals[3][4],paevals[3][4]);
dummyMat.makeGroups(0.5f, false);
+ Assert.assertNotSame(dummyMat.getNewick(), "");
AlignmentAnnotation paeCm = sq.addContactList(dummyMat);
al.addAnnotation(paeCm);
File tfile = File.createTempFile("testStoreAndRecoverPAEmatrix",