JAL-2527 move default colours for applet / application out of gui.Preferences so...

[jalview.git] / test / jalview / renderer / OverviewResColourFinderTest.java

diff --git a/test/jalview/renderer/OverviewResColourFinderTest.java b/test/jalview/renderer/OverviewResColourFinderTest.java
index 649a0bf..1687516 100644 (file)
--- a/test/jalview/renderer/OverviewResColourFinderTest.java
+++ b/test/jalview/renderer/OverviewResColourFinderTest.java
@@ -22,16 +22,20 @@ package jalview.renderer;
 
 import static org.testng.AssertJUnit.assertEquals;
 
+import jalview.bin.Cache;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignViewport;
 import jalview.gui.JvOptionPane;
+import jalview.schemes.ColourSchemeI;
 import jalview.schemes.UserColourScheme;
 import jalview.schemes.ZappoColourScheme;
 
 import java.awt.Color;
+import java.util.ArrayList;
 
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -44,6 +48,7 @@ public class OverviewResColourFinderTest
   {
     JvOptionPane.setInteractiveMode(false);
     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+    Cache.loadProperties("test/jalview/io/testProps.jvprops");
   }
 
   @Test(groups = { "Functional" })
@@ -158,4 +163,137 @@ public class OverviewResColourFinderTest
     assertEquals(Color.pink, rcf.getResidueColour(false,
             av.getResidueShading(), null, seq, 3, null));
   }
+
+  @Test
+  public void testGetResidueBoxColour_group()
+  {
+    SequenceI seq = new Sequence("name", "MA--TVLGSPRAPAFF");
+    AlignmentI al = new Alignment(new SequenceI[] { seq });
+    
+    ColourSchemeI cs = new ZappoColourScheme();
+    ArrayList<SequenceI> seqlist = new ArrayList<>();
+    seqlist.add(seq);
+    SequenceGroup sg = new SequenceGroup(seqlist, "testgroup", cs, true,
+            true, true, 5, 9);
+    al.addGroup(sg);
+    SequenceGroup[] groups = new SequenceGroup[1];
+    groups[0] = sg;
+    
+    final AlignViewport av = new AlignViewport(al);
+    ResidueColourFinder rcf = new OverviewResColourFinder();
+    
+    // G in group specified as magenta in Zappo
+    assertEquals(Color.magenta, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 7, null));
+
+    // Residue outside group coloured white
+    assertEquals(Color.white, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 0, null));
+
+    // Gap outside group coloured lightgray
+    assertEquals(Color.lightGray, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 2, null));
+
+    // use legacy colouring
+    rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
+  
+    // G in group specified as magenta in Zappo
+    assertEquals(Color.magenta, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 7, null));
+
+    // Residue outside group coloured lightgray
+    assertEquals(Color.lightGray, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 0, null));
+
+    // Gap outside group coloured white
+    assertEquals(Color.white, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 2, null));
+
+    // use new colouring
+    rcf = new OverviewResColourFinder(false, Color.blue, Color.red);
+
+    // G in group specified as magenta in Zappo
+    assertEquals(Color.magenta, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 7, null));
+
+    // Residue outside group coloured white
+    assertEquals(Color.white, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 0, null));
+
+    // Gap outside group coloured blue
+    assertEquals(Color.blue, rcf.getResidueColour(false,
+            av.getResidueShading(), groups, seq, 2, null));
+  }
+
+  @Test
+  public void testGetBoxColour()
+  {
+    SequenceI seq = new Sequence("name", "MAT--GSPRAPAFF"); // FER1_MAIZE... + a
+                                                            // gap
+    AlignmentI al = new Alignment(new SequenceI[] { seq });
+    final AlignViewport av = new AlignViewport(al);
+
+    // non-legacy colouring
+    ResidueColourFinder rcf = new OverviewResColourFinder();
+    ResidueShaderI shader = new ResidueShader();
+
+    // residues white
+    Color c = rcf.getBoxColour(shader, seq, 0);
+    assertEquals(Color.white, c);
+
+    // gaps gap colour
+    c = rcf.getBoxColour(shader, seq, 3);
+    assertEquals(
+            jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP,
+            c);
+
+    // legacy colouring set explicitly via constructor
+    rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
+    shader = new ResidueShader();
+
+    // residues light gray
+    c = rcf.getBoxColour(shader, seq, 0);
+    assertEquals(Color.lightGray, c);
+
+    // gaps white
+    c = rcf.getBoxColour(shader, seq, 3);
+    assertEquals(Color.white, c);
+
+    // legacy colouring off
+    rcf = new OverviewResColourFinder();
+    shader = new ResidueShader();
+
+    // residues white
+    c = rcf.getBoxColour(shader, seq, 0);
+    assertEquals(Color.white, c);
+
+    // gaps gap colour
+    c = rcf.getBoxColour(shader, seq, 3);
+    assertEquals(
+            jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP,
+            c);
+
+    // non legacy colouring with colour scheme
+    rcf = new OverviewResColourFinder(false, Color.blue, Color.red);
+    shader = new ResidueShader(new ZappoColourScheme());
+
+    // M residue pink
+    c = rcf.getBoxColour(shader, seq, 0);
+    assertEquals(Color.pink, c);
+
+    // gaps blue
+    c = rcf.getBoxColour(shader, seq, 3);
+    assertEquals(Color.blue, c);
+
+    // legacy colouring with colour scheme
+    rcf = new OverviewResColourFinder(true, Color.blue, Color.red);
+
+    // M residue pink
+    c = rcf.getBoxColour(shader, seq, 0);
+    assertEquals(Color.pink, c);
+
+    // gaps white
+    c = rcf.getBoxColour(shader, seq, 3);
+    assertEquals(Color.white, c);
+  }
 }