import static org.testng.AssertJUnit.assertEquals;
+import jalview.api.AlignViewportI;
import jalview.bin.Cache;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.schemes.ColourSchemeI;
import jalview.schemes.UserColourScheme;
import jalview.schemes.ZappoColourScheme;
+import jalview.viewmodel.AlignmentViewport;
import java.awt.Color;
import java.util.ArrayList;
{
SequenceI seq = new Sequence("name", "MA--TVLGSPRAPAFF");
AlignmentI al = new Alignment(new SequenceI[] { seq });
- final AlignViewport av = new AlignViewport(al);
+ final AlignViewportI av = new AlignViewport(al);
ResidueColourFinder rcf = new OverviewResColourFinder();
// gaps are grey, residues white
SequenceI seq = new Sequence("name", "MAT--GSPRAPAFF"); // FER1_MAIZE... + a
// gap
AlignmentI al = new Alignment(new SequenceI[] { seq });
- final AlignViewport av = new AlignViewport(al);
+ final AlignViewportI av = new AlignViewport(al);
ResidueColourFinder rcf = new OverviewResColourFinder();
av.setGlobalColourScheme(new ZappoColourScheme());
SequenceI seq = new Sequence("name", "MAT--GSPRAPAFF"); // FER1_MAIZE... + a
// gap
AlignmentI al = new Alignment(new SequenceI[] { seq });
- final AlignViewport av = new AlignViewport(al);
+ final AlignViewportI av = new AlignViewport(al);
ResidueColourFinder rcf = new OverviewResColourFinder();
Color[] newColours = new Color[24];
SequenceGroup[] groups = new SequenceGroup[1];
groups[0] = sg;
- final AlignViewport av = new AlignViewport(al);
+ final AlignViewportI av = new AlignViewport(al);
ResidueColourFinder rcf = new OverviewResColourFinder();
// G in group specified as magenta in Zappo
{
SequenceI seq = new Sequence("name", "MAT--GSPRAPAFF"); // FER1_MAIZE... + a
// gap
- AlignmentI al = new Alignment(new SequenceI[] { seq });
- final AlignViewport av = new AlignViewport(al);
// non-legacy colouring
ResidueColourFinder rcf = new OverviewResColourFinder();
// gaps gap colour
c = rcf.getBoxColour(shader, seq, 3);
- assertEquals(
- jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP,
- c);
+ assertEquals(OverviewResColourFinder.OVERVIEW_DEFAULT_GAP, c);
// non legacy colouring with colour scheme
rcf = new OverviewResColourFinder(false, Color.blue, Color.red);